Factsheet for TraesCS7D01G280800.4

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 4
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G493700.1
TraesCS2B01G521700.1
TraesCS2D01G493600.1
TraesCS4A01G246100.1
TraesCS4B01G069300.1
TraesCS4D01G068100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	TraesCS2A01G493700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2B01G521700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2D01G493600.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS4A01G246100.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4B01G069300.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4D01G068100.1	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7B01G179000.2	Wheat	plastid	97.88	97.78
TraesCS7A01G282200.4	Wheat	plastid	97.08	97.37
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	81.05	80.97
Zm00001d050489_P001	Maize	nucleus	31.85	69.15
OQU80649	Sorghum	nucleus	53.12	65.38
Os08t0478500-01	Rice	plastid	64.01	64.93
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	43.65	47.85
GSMUA_Achr10P...	Banana	nucleus	18.85	46.06
GSMUA_Achr7P19010_001	Banana	nucleus	19.86	42.83
GSMUA_Achr10P...	Banana	golgi	18.55	40.89
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	15.62	40.16
GSMUA_Achr5P22990_001	Banana	vacuole	35.48	39.15
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	29.33	38.8
CDY08792	Canola	vacuole	29.03	38.45
CDY14564	Canola	golgi	29.33	38.19
Bra024386.1-P	Field mustard	golgi	29.33	37.94
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	28.02	37.57
VIT_00s0199g00030.t01	Wine grape	vacuole	32.46	35.66
KRH69660	Soybean	golgi	31.25	33.05
KRH74502	Soybean	golgi, plasma membrane, vacuole	30.85	33.01
KRH52893	Soybean	extracellular, golgi, vacuole	29.23	32.66
KRH16837	Soybean	golgi	34.17	32.44
KRH72452	Soybean	golgi, plasma membrane	33.17	31.76
AT4G24560.1	Thale cress	extracellular, golgi	30.54	30.06
CDY11021	Canola	golgi	30.44	29.93
KRH62182	Soybean	golgi, vacuole	34.27	29.88
CDX92643	Canola	golgi	30.44	29.81
Bra019219.1-P	Field mustard	golgi	30.24	29.64
CDY03441	Canola	golgi	29.94	29.32
CDY34291	Canola	golgi	29.84	29.02
Bra013814.1-P	Field mustard	golgi	29.84	29.02
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	35.18	28.49
Solyc04g076210.2.1	Tomato	nucleus	31.55	28.48
TraesCS4D01G304300.1	Wheat	cytosol	10.38	28.14
TraesCS7D01G125700.1	Wheat	nucleus	10.28	27.87
TraesCS6D01G179700.1	Wheat	plasma membrane	25.71	26.1
TraesCS6D01G187000.1	Wheat	nucleus, plastid	10.18	24.75
TraesCS2D01G517600.1	Wheat	mitochondrion	8.97	24.05
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	21.57	20.09
TraesCS1D01G331300.1	Wheat	plastid	12.9	19.81
TraesCS1D01G196500.1	Wheat	cytosol	10.89	19.15
TraesCS6D01G250100.1	Wheat	nucleus	13.0	17.46
TraesCS7D01G149800.1	Wheat	nucleus	14.72	15.58
TraesCS6D01G339500.1	Wheat	nucleus	14.62	14.04
TraesCS1D01G196600.1	Wheat	nucleus	12.1	13.78
TraesCS2D01G129600.2	Wheat	cytosol	9.88	12.71

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002893	InterPro:IPR028889
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS7D01G280800	EnsemblPlants:TraesCS7D01G280800.4	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	TIGR:cd02661
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7D:-:274688664..274703097

Molecular Weight (calculated)

109212.0 Da

IEP (calculated)

7.233

GRAVY (calculated)

-0.516

Length

992 amino acids

Sequence
(BLAST)

001: MAMAEAAGSS TAATAVTVVL FIVVLVVALL LRQSLRRAAE RREEVRRLAR LAAEESELAE RESVLAYCSE LFPGVLHAAD VPEAPMWAPR EVVSPQEEEE
101: GVVEAPAPPP AAAGVCAVCF RPTTFRCKQC KAVKYCSFKC QISHWRKGHK DECHPPSANA KPDDGAAISV AKEGNVEHRR ASEENVVAGV QPVAEISVPV
201: AAESETSGTN HVVKSSNDKR KDTPFEGVSA TTEIPEKGNS DNVVKLGQIT PQVASFDSKR AESNTKSTNF VGNSYVKDLD DILVHKSQVS APKMSGLTSS
301: IHEDIYVHCK DHGNAEDADV SKDCSRINHI RKPADRSYSQ MAATAVPAPK SSRTSLRVEV EPCKIKATGE EKSQGLKLVT PVLAVDKVSS IHGGRSVAPN
401: PSRRADNPTD RGGSAANNLA TSLKKIVRQQ TTPKVVRHYP SELTLFPYDV FIKLYDKVEL RPFGLHNLGN SCYANVVLQC LMFTRPLTTY LLGGLHSKNC
501: SKKAWCFMCE FERLIVEGKQ GKTALSPTGI LSHLHEIGSS FGPGKQEDAH EFLRHSIDAM QSVCIKEARK GGAHCSAEET TLVQLIFGGY LRSKIKCTRC
601: HISSEQYERM LDLTVEIDGD ISSLEEALQR FTSTEVLDGD NRYQCSRCNS YERAKKKLTI SEAPNVLTIA LKRYQSGKFG KISKAIRFPE TLNLSCYMNS
701: TDDNSPVYSL YGMVVHHDVM NAAFSGHYVC YVKDTHGKWY KIDDSQVKPV SLENVMSKCA YMLFYARAPN SVRHAMMVND PSYAKKAKHK PNLEQTPLQR
801: GSLNRHQGGE LHRDHITDNL IRRFDEFGDA PYPAAESPSP SESSSLFSNS DAGSHSTVST DSSESTRNST STDDYEQYFF GSSDQMYLGG PRGAHEEIGY
901: TSYSRSRSAL GTSSSGQEVD EERSVEQRFE VSRGGWLEGG ESSPLSYTDQ SKEHLLTEQY RQFGGSEHDP GEARGSVLLR RSAREKTAQT FY

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.