Subcellular Localization
min:
: max
Winner_takes_all: golgi
Predictor Summary:
Predictor Summary:
- extracellular 5
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 5
- golgi 7
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY34291 | Canola | golgi | 94.67 | 94.02 |
| CDY11021 | Canola | golgi | 80.36 | 80.67 |
| CDX92643 | Canola | golgi | 80.55 | 80.55 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 76.31 | 76.69 |
| KRH72452 | Soybean | golgi, plasma membrane | 41.86 | 40.93 |
| KRH16837 | Soybean | golgi | 41.95 | 40.67 |
| KRH52893 | Soybean | extracellular, golgi, vacuole | 35.64 | 40.65 |
| GSMUA_Achr7P19020_001 | Banana | endoplasmic reticulum, golgi | 15.4 | 40.41 |
| KRH62182 | Soybean | golgi, vacuole | 44.92 | 39.98 |
| GSMUA_Achr10P... | Banana | golgi | 17.57 | 39.56 |
| CDY08792 | Canola | vacuole | 29.22 | 39.52 |
| VIT_18s0001g07370.t01 | Wine grape | golgi, vacuole | 46.89 | 38.78 |
| CDY14564 | Canola | golgi | 29.12 | 38.71 |
| GSMUA_Achr5P22990_001 | Banana | vacuole | 34.35 | 38.71 |
| GSMUA_Achr10P... | Banana | nucleus | 14.51 | 36.21 |
| CDX68773 | Canola | nucleus, plasma membrane | 21.52 | 35.5 |
| CDX75188 | Canola | vacuole | 21.32 | 35.35 |
| GSMUA_Achr7P19010_001 | Banana | nucleus | 15.79 | 34.78 |
| HORVU5Hr1G069620.20 | Barley | cytosol, nucleus | 24.98 | 34.33 |
| CDY45587 | Canola | endoplasmic reticulum, vacuole | 21.42 | 34.28 |
| CDY20330 | Canola | vacuole | 21.42 | 33.75 |
| Zm00001d050489_P001 | Maize | nucleus | 15.2 | 33.7 |
| CDY34761 | Canola | endoplasmic reticulum, vacuole | 21.42 | 33.7 |
| CDX76801 | Canola | endoplasmic reticulum, golgi, vacuole | 21.52 | 33.49 |
| GSMUA_AchrUn_... | Banana | golgi, vacuole | 32.18 | 32.18 |
| Os08t0478500-01 | Rice | plastid | 31.0 | 32.11 |
| Os09t0464400-00 | Rice | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 28.92 | 31.57 |
| TraesCS5D01G252600.2 | Wheat | endoplasmic reticulum, vacuole | 28.04 | 31.38 |
| TraesCS5B01G243400.1 | Wheat | vacuole | 27.94 | 30.9 |
| OQU80649 | Sorghum | nucleus | 24.58 | 30.89 |
| TraesCS7A01G282200.4 | Wheat | plastid | 29.61 | 30.33 |
| TraesCS7B01G179000.2 | Wheat | plastid | 29.52 | 30.11 |
| TraesCS7D01G280800.4 | Wheat | plastid | 29.32 | 29.94 |
| Zm00001d020769_P005 | Maize | nucleus | 25.17 | 29.79 |
| TraesCS5A01G246000.3 | Wheat | vacuole | 27.84 | 29.31 |
| OQU89635 | Sorghum | vacuole | 26.36 | 29.28 |
| CDX96790 | Canola | nucleus | 22.9 | 27.78 |
| CDY65125 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 23.89 | 27.59 |
| CDY48465 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 23.79 | 27.51 |
| CDX83925 | Canola | nucleus | 23.0 | 27.51 |
| HORVU7Hr1G064340.3 | Barley | endoplasmic reticulum | 26.75 | 27.29 |
| CDY13770 | Canola | nucleus | 9.28 | 26.4 |
| CDX72275 | Canola | cytosol | 9.58 | 26.22 |
| CDX76934 | Canola | nucleus | 8.98 | 25.71 |
| CDX69375 | Canola | nucleus | 9.28 | 25.34 |
| CDY68864 | Canola | nucleus | 9.28 | 25.27 |
| CDY63898 | Canola | nucleus | 9.28 | 23.62 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 9.87 | 20.53 |
| CDY23262 | Canola | nucleus | 10.86 | 20.11 |
| CDY40119 | Canola | nucleus | 11.25 | 19.52 |
| CDX85744 | Canola | cytosol | 11.15 | 19.42 |
| CDX87681 | Canola | nucleus | 11.94 | 19.21 |
| CDX97571 | Canola | mitochondrion | 13.13 | 18.79 |
| CDX98449 | Canola | mitochondrion | 12.93 | 18.61 |
| CDY36465 | Canola | cytosol | 10.76 | 18.57 |
| CDX76553 | Canola | cytosol | 11.75 | 18.54 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 10.76 | 18.47 |
| CDY37145 | Canola | cytosol | 12.04 | 18.32 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 10.76 | 18.26 |
| CDX75770 | Canola | mitochondrion, nucleus | 11.85 | 18.07 |
| CDY58499 | Canola | endoplasmic reticulum | 12.73 | 17.89 |
| CDX77686 | Canola | endoplasmic reticulum | 12.73 | 17.09 |
| CDY50263 | Canola | cytosol | 4.54 | 16.97 |
| CDY11838 | Canola | nucleus, plastid | 13.62 | 16.85 |
| CDX88651 | Canola | nucleus, plastid | 13.52 | 16.63 |
| CDY02782 | Canola | nucleus | 13.13 | 16.6 |
| CDY57464 | Canola | nucleus | 13.82 | 16.51 |
| CDY32735 | Canola | nucleus | 13.03 | 16.48 |
| CDY55010 | Canola | nucleus | 13.72 | 16.35 |
| CDX87682 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.3.1.1.7 | Gene3D:3.30.60.180 | Gene3D:3.90.70.10 | GO:A0A078EQF8 | EnsemblPlants:CDY03441 | ProteinID:CDY03441 |
| ProteinID:CDY03441.1 | ncoils:Coil | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | EnsemblPlantsGene:GSBRNA2T00116094001 | InterPro:IPR002893 | InterPro:IPR028889 | PFAM:PF00443 |
| PFAM:PF01753 | ScanProsite:PS00972 | ScanProsite:PS01360 | PFscan:PS50235 | PFscan:PS50865 | PANTHER:PTHR45492 |
| InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF144232 | SUPFAM:SSF54001 | TMHMM:TMhelix | UniParc:UPI0004EDF646 |
| InterPro:USP_CS | InterPro:USP_dom | InterPro:Znf_MYND | SEG:seg | : | : |
Description
BnaC01g16410D
Coordinates
chrLK031943:+:478620..483585
Molecular Weight (calculated)
110838.0 Da
IEP (calculated)
7.457
GRAVY (calculated)
-0.477
Length
1013 amino acids
Sequence
(BLAST)
(BLAST)
0001: MLLVLDLGLS SLVLVISLLA IPLIGFVVRR QWRLAALRRE EIRRLLIHAS EEAARVEREA SVEFSFAPVA NSFYCPVCYC PAFTRCSRCK AVRYCSGKCQ
0101: IIHWRQGHKD ECQPASITYN TDDEKSDSDL KCGEGNEGLT RDETVLLHSE AATGPIREAI ISEPARSSED VSGESADNKD DLIDKEEAVS VAETSGSSFS
0201: GFSSSPRGDS SDDTSLGECL SSSDSERSEP LLDAHVSVAA EETCFSNIDD VPSKPLSPKF VHLVESVDNL ASLPKLNLLK PEGGAGQNQS QSSSLLGPDR
0301: LPGSADPSLL KSSDFWGTAL GSAECVIENR DSSKSREPGK SSLHISFAPS RDTSAGKVSE HRNFISEETP RAASGSPNFH DEVNRNERIA KRSDEAGISL
0401: SSSSSIKAPL PLNPTGLSTL TLRKSKSTST GSGVVLAPLK VGEVQVLASK TTKARESPDV VKHSAVGADS GRVIDHQKKN GVAVRRINSL NGKSGLKASV
0501: LKVVDQWTKP KSLAENEMAG RHGHKGLFSY ELFVKLYTNK TELQPCGLIN SGNSCFANVV FQCLMFTPPL TTYFLQQHHS RACPNKEQCF TCGFENLVLE
0601: ATEGKSSLSP SGLLSRLQNI GISLGNGKQE DAHEFLRFVV DTMQTLCIKA SEYDEPKTRK LEDTTLIGLT FGGYLRSKIK CMKCQEKSER REKMMDLTVE
0701: IDGDISTLED ALRRFTRTEI LDGENKYKCG RCKSYERAKK KLKIIEPPNV LTIALKRFQS GKFGKLNKLV RFPETLDLAP YVSGGSEKSH DYKLYGVIVH
0801: LDVMNAAFSG HYVCYIRNSQ NKWYKADDNT VVTSDVERVL TKGAYMLFYA RCSPMPPRLV VCNKTEASTN KKRSVPPPVP KTTVSRSVST ASPVCSSNTP
0901: GGDRSGNIQS FYSSFQRLQR ILEEDSSSDS SSLFDSNSDE CSCSTDSTSM DDFADFIFGD HQGRAHGHSE APSPTSTSSS PSPPFTRHSR LGDSSRYSPE
1001: TCPASRHHHR GER
0101: IIHWRQGHKD ECQPASITYN TDDEKSDSDL KCGEGNEGLT RDETVLLHSE AATGPIREAI ISEPARSSED VSGESADNKD DLIDKEEAVS VAETSGSSFS
0201: GFSSSPRGDS SDDTSLGECL SSSDSERSEP LLDAHVSVAA EETCFSNIDD VPSKPLSPKF VHLVESVDNL ASLPKLNLLK PEGGAGQNQS QSSSLLGPDR
0301: LPGSADPSLL KSSDFWGTAL GSAECVIENR DSSKSREPGK SSLHISFAPS RDTSAGKVSE HRNFISEETP RAASGSPNFH DEVNRNERIA KRSDEAGISL
0401: SSSSSIKAPL PLNPTGLSTL TLRKSKSTST GSGVVLAPLK VGEVQVLASK TTKARESPDV VKHSAVGADS GRVIDHQKKN GVAVRRINSL NGKSGLKASV
0501: LKVVDQWTKP KSLAENEMAG RHGHKGLFSY ELFVKLYTNK TELQPCGLIN SGNSCFANVV FQCLMFTPPL TTYFLQQHHS RACPNKEQCF TCGFENLVLE
0601: ATEGKSSLSP SGLLSRLQNI GISLGNGKQE DAHEFLRFVV DTMQTLCIKA SEYDEPKTRK LEDTTLIGLT FGGYLRSKIK CMKCQEKSER REKMMDLTVE
0701: IDGDISTLED ALRRFTRTEI LDGENKYKCG RCKSYERAKK KLKIIEPPNV LTIALKRFQS GKFGKLNKLV RFPETLDLAP YVSGGSEKSH DYKLYGVIVH
0801: LDVMNAAFSG HYVCYIRNSQ NKWYKADDNT VVTSDVERVL TKGAYMLFYA RCSPMPPRLV VCNKTEASTN KKRSVPPPVP KTTVSRSVST ASPVCSSNTP
0901: GGDRSGNIQS FYSSFQRLQR ILEEDSSSDS SSLFDSNSDE CSCSTDSTSM DDFADFIFGD HQGRAHGHSE APSPTSTSSS PSPPFTRHSR LGDSSRYSPE
1001: TCPASRHHHR GER
0001: MLLVLDLGIS SLVLVVSLVL PLIGLFVRHK WRVAAQRREE IRRLLIHASE EAARAELEAS VEFSSVAVSN VFHCPVCYCL ATTRCSRCKA VRYCSGKCQI
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
0101: IHWRQGHKDE CHPASIVYDS EDESDSDLRL GEENGQNTPE ETLLVGPEPV TIPIGESLLS NRARSPEDGN GDIADNKDDL IDKEEAVSVA ETSGSSFSGF
0201: SSSPRNDSGD EISRCESFSS SESERSESLL DAHVSVEPED TCFSTIEDAP SKLLSPKFVH LVESVDNLAN LPKLSVHKPE DDAGQNQSQS RSLHSLVTDR
0301: HPVSADPSLK SSDFWGTALG SAERVSDSCV KSKSGRPGNS SLHFSFGSGS SRDTSAAKVS EQRSSILKEA PRGTGYISDG VNLRERNAKR FDEAEIALPI
0401: SSSTDALSPL DSSNLSHVTL PKSKSASSEN GSMLAPLKVG EVQLLASKAS NTKKCADLMK HSPLGAKSVR VLDHQKQNGA VVQHINSLHG RSGLKASVLK
0501: VVDQWTRPKS ENEMAGRHGH KGLFPYEVFA KLYTYKIEFQ PCGLINVGNS CFANVVFQCL MFTPPLTTYF LQQFHSRACT KKEQCFTCGF EKLVVKAKEE
0601: KSPLSPNGLL SQLQNIGIFL GNGKEEDAHE FLRFVVDTMQ SVCIKASEYD MTKSSKLEDT TLIGLTFGGY LRSKIKCMKC QVKSELREKM MDLTVEIDGD
0701: ISTLDDALRR FTRTEILDGE NKYRCGSCKS YERAKKKLKI TEPPNVLTIA LKRFQAGKFG KLNKLIRFPE TLDLAPYVSG GSEKSHDYKL YGVIVHLDVM
0801: NAAFSGHYVC YIRNQNKWYK ADDSTVVTSD VERILTKGAY MLFYARCTPT PPRLAVCTKT EASNKKSRVP LPKANEKSTI SRSVSTSSPE LSSNTPGGGR
0901: SGNIQSFYSS FQRLQKILEE DSASDSSSLF DSNSDECSCS TDSTSMDDFA DFIFGDHQGR AHGQSETPSP TSSSSSSSPP FTRRSPLSRS SPETYGTSRH
1001: QLPLGGER
Arabidopsis Description
UBP16Ubiquitin carboxyl-terminal hydrolase 16 [Source:UniProtKB/Swiss-Prot;Acc:Q9SB51]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.