Factsheet for TraesCS5B01G243400.1

Subcellular Localization

min:

: max

Winner_takes_all: vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 5
plasma membrane 4
golgi 4
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	vacuole
Any Predictor:	nucleus, secretory
iPSORT:	secretory
MultiLoc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G493700.1
TraesCS2B01G521700.1
TraesCS2D01G493600.1
TraesCS4A01G246100.1
TraesCS4B01G069300.1
TraesCS4D01G068100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	TraesCS2A01G493700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2B01G521700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2D01G493600.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS4A01G246100.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4B01G069300.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4D01G068100.1	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	88.54	89.61
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	66.59	82.77
TraesCS5A01G246000.3	Wheat	vacuole	86.79	82.64
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	56.33	55.6
Zm00001d020769_P005	Maize	nucleus	45.96	49.18
OQU89635	Sorghum	vacuole	46.07	46.27
TraesCS7B01G179000.2	Wheat	plastid	47.71	44.01
GSMUA_Achr10P...	Banana	nucleus	19.21	43.35
GSMUA_Achr7P19010_001	Banana	nucleus	20.52	40.87
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	16.27	38.6
GSMUA_Achr10P...	Banana	golgi	18.67	38.0
GSMUA_Achr5P22990_001	Banana	vacuole	36.03	36.71
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	29.26	35.73
CDY14564	Canola	golgi	29.37	35.3
CDY08792	Canola	vacuole	28.82	35.25
Bra024386.1-P	Field mustard	golgi	29.15	34.81
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	27.51	34.05
KRH74502	Soybean	golgi, plasma membrane, vacuole	31.55	31.18
VIT_00s0199g00030.t01	Wine grape	vacuole	30.57	31.01
KRH69660	Soybean	golgi	31.33	30.6
KRH52893	Soybean	extracellular, golgi, vacuole	29.26	30.18
KRH16837	Soybean	golgi	34.17	29.95
KRH72452	Soybean	golgi, plasma membrane	33.08	29.25
CDX92643	Canola	golgi	31.22	28.23
AT4G24560.1	Thale cress	extracellular, golgi	31.0	28.17
CDY11021	Canola	golgi	31.0	28.15
Bra019219.1-P	Field mustard	golgi	31.0	28.06
CDY03441	Canola	golgi	30.9	27.94
Solyc04g076210.2.1	Tomato	nucleus	33.19	27.66
CDY34291	Canola	golgi	30.57	27.45
Bra013814.1-P	Field mustard	golgi	30.57	27.45
KRH62182	Soybean	golgi, vacuole	33.52	26.98
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	35.59	26.61
TraesCS4B01G306100.1	Wheat	cytosol	10.37	25.96
TraesCS2B01G544700.1	Wheat	mitochondrion	10.37	25.68
TraesCS6B01G231700.4	Wheat	plasma membrane	25.66	23.88
TraesCS2B01G408400.1	Wheat	cytosol	10.48	22.27
TraesCS6B01G223900.1	Wheat	plastid	9.93	21.72
TraesCS7B01G405400.1	Wheat	golgi, plasma membrane	23.91	20.37
TraesCS1B01G342600.2	Wheat	plastid	13.86	19.66
TraesCS3B01G442400.1	Wheat	cytosol	12.23	18.01
TraesCS6B01G291800.1	Wheat	nucleus	13.32	16.51
TraesCS7B01G051400.2	Wheat	nucleus	15.72	15.34
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	12.45	13.26
TraesCS2B01G149000.2	Wheat	cytosol	10.81	12.84
TraesCS6B01G389500.1	Wheat	nucleus	14.41	12.35

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002893	InterPro:IPR028889
PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	SignalP:SignalP-noTM	TMHMM:TMhelix
EnsemblPlantsGene:TraesCS5B01G243400	EnsemblPlants:TraesCS5B01G243400.1	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg

Description

No Description!

Coordinates

chr5B:-:423630396..423643396

Molecular Weight (calculated)

100824.0 Da

IEP (calculated)

6.426

GRAVY (calculated)

-0.425

Length

916 amino acids

Sequence
(BLAST)

001: MASFVAALVA IVVVALVAVM RRAAARKEDV RRTAWLAAEQ AQFAERDAYY YYDHHAAPHW TAPDTTQWTA PQVAWPPVEQ MAAPPVAWPA VEQMAATPVA
101: WPAVEQVAAT PVAWPPVEKV AALPVAWPPA VKVAAPEVAW PPVDQVAAPH VAWPPVDQVA APEVAWPRDE HVAAPRLEQE AATEPTLAAA AGKKGPCVVC
201: RKPTTFRCKR CKGVKYCAVK CQIAHWRQGH KDECHPVSAD AREDTTIEAS STKKIERTSS DEESVVTGVE QAVESKEMPL EKASNTSEAS QQDSKEFTFP
301: QVTGHAESAD CSSSPTFGKP CKVEGASVSE NGSHTQIPVA CDPSEKADDR PEFSAKSEIG VVVPDDLPTK SLVRQQTAPT IVRHYSSEST LFPYERFVKL
401: YNSDKVELRP FGLCNLGNSC YANVVLQCLA FTRPLTAYFL EGLHSKNCSQ KEWCFLCEFQ KLIVEGKQGH SPLSPTGILS HLSDIGSSFG PGEEEDAHEF
501: LRYAIDTMQS ASMKEANANG AHKLAEETTL IQLMFVGYLR SKIKCTKCGV SSEHCERIMD LTVEIDGDIS TLEEALHRFT SSEVLDGDNR YHCTRCKSYE
601: RGKKKLTISE APNILTIALK RYQSGMFGKI NKAIRFPEYL NLSSYMSTTD DCSPVYRLYA VVVHRDVMNS SVSGHYICYV KDSQGKWYEM DDSQVKPVSL
701: KNVRSERAYM LLYTRCSPRA PRSLRKLIIA QGLSHTRKAR QTTDPVSTCL EGRSHFSRHQ GTQWQSCRDH VMNGHTYKLV TSGGSSNPVL EPTSTSEDSS
801: LFSHSDVGSS GNLSSDNTDS TKNPGSTKEC TFGSSDQMHP VSTVVMPEEH SRQMSSLNPS SSTQYADQGE VDRLHQLNLQ ASKGVWDEGC ETPSFFYVDQ
901: GGLYGCQDPG FSAHPI

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.