Factsheet for Zm00001d020769_P005

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d009738_P001
Zm00001d040457_P001
Zm00001d049234_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	Zm00001d040457_P001	AT4G13930.1	23232097
AT4G24560.1	Zm00001d049234_P001	AT4G13930.1	23232097
AT4G24560.1	Zm00001d009738_P001	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89635	Sorghum	vacuole	81.19	76.21
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	45.91	53.32
Zm00001d050489_P001	Maize	nucleus	26.75	50.11
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	53.39	49.25
TraesCS5B01G243400.1	Wheat	vacuole	49.18	45.96
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	47.9	45.3
TraesCS5A01G246000.3	Wheat	vacuole	48.95	43.56
GSMUA_Achr10P...	Banana	nucleus	19.74	41.63
GSMUA_Achr7P19010_001	Banana	nucleus	21.5	40.0
GSMUA_Achr10P...	Banana	golgi	17.64	33.56
GSMUA_Achr5P22990_001	Banana	vacuole	35.16	33.48
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	29.32	33.47
CDY14564	Canola	golgi	29.32	32.94
CDY08792	Canola	vacuole	28.74	32.84
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	28.39	32.84
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	14.6	32.38
Bra024386.1-P	Field mustard	golgi	28.86	32.2
VIT_00s0199g00030.t01	Wine grape	vacuole	32.24	30.56
KRH74502	Soybean	golgi, plasma membrane, vacuole	32.48	29.99
Zm00001d000312_P002	Maize	plastid	9.81	29.89
KRH69660	Soybean	golgi	32.01	29.21
KRH16837	Soybean	golgi	34.46	28.23
KRH72452	Soybean	golgi, plasma membrane	33.64	27.8
KRH52893	Soybean	extracellular, golgi, vacuole	28.74	27.7
Zm00001d003476_P002	Maize	cytosol	11.45	26.63
Zm00001d025570_P003	Maize	nucleus	11.45	26.63
Zm00001d028005_P001	Maize	nucleus	11.1	25.96
KRH62182	Soybean	golgi, vacuole	34.0	25.57
AT4G24560.1	Thale cress	extracellular, golgi	29.79	25.3
CDY03441	Canola	golgi	29.79	25.17
CDY11021	Canola	golgi	29.56	25.07
CDY34291	Canola	golgi	29.79	25.0
Bra013814.1-P	Field mustard	golgi	29.79	25.0
Bra019219.1-P	Field mustard	golgi	29.32	24.8
CDX92643	Canola	golgi	29.32	24.78
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	35.16	24.57
Solyc04g076210.2.1	Tomato	nucleus	31.07	24.2
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	25.93	22.89
Zm00001d016918_P001	Maize	plastid	11.1	22.78
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	26.52	22.56
Zm00001d036707_P006	Maize	plasma membrane	24.53	21.92
Zm00001d002086_P001	Maize	plastid	12.85	19.54
Zm00001d051513_P001	Maize	nucleus	13.2	19.12
Zm00001d010710_P002	Maize	plastid	14.49	18.16
Zm00001d022414_P001	Maize	cytosol	11.68	18.12
Zm00001d047023_P001	Maize	nucleus	12.62	17.39
Zm00001d017686_P002	Maize	mitochondrion, nucleus	14.37	16.62
Zm00001d045104_P005	Maize	nucleus	17.29	16.39
Zm00001d000313_P001	Maize	nucleus	4.79	11.08
Zm00001d007096_P007	Maize	mitochondrion	11.33	8.2

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	UniProt:A0A1D6I638	GO:GO:0003674	GO:GO:0003824
GO:GO:0005488	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872
InterPro:IPR002893	InterPro:IPR028889	ProteinID:ONM55555.1	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972
ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45499	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF144232	SUPFAM:SSF54001	UniParc:UPI0008440FB5	InterPro:USP_CS	InterPro:USP_dom	EnsemblPlantsGene:Zm00001d020769
EnsemblPlants:Zm00001d020769_P005	EnsemblPlants:Zm00001d020769_T005	InterPro:Znf_MYND	SEG:seg	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 17

Coordinates

chr7:-:131682962..131700527

Molecular Weight (calculated)

93799.0 Da

IEP (calculated)

7.896

GRAVY (calculated)

-0.555

Length

856 amino acids

Sequence
(BLAST)

001: MEARNEEVRR LALLAAAEEE TIAREEAYYY GQYGGFVRSS DLPEAPSLWA AQEVPPAPKE VMAEAAAAAA ATVASPTAGK GVCAMCSKPT TLRCKRCKSV
101: KYCTLKCQID HWRNGHKDQC HPLGHGATQD DTPENVMAGV GLKDMPSGAS TTYQICDDNK DMLYSQFTGK AESVDYSKLS TSSKICKVCD GTVHENSCPA
201: HDQHVGLEPE PEQSNKQALG TENHESLRKL PCMPAVDKVP SAQSGTYCLA SNQLKREDDP PGPCARPESS GLMPHNSSTE KNYARQQTTT IAARNYPTES
301: TVFAYKKFVE LYSFNKLELH PFGLCNLGNS CYANAILQCL AFTRPLTAYL LEGYHSQNCS KTEWCFMCEL EKVLIEGKQG KSPVSPTGIL YHLNEIGVSF
401: GQGEEEDAHE FMRYAIDNMQ SASMEEAKKN GIQQLAEETT LVQFIFGGYL RSKIKCTKCQ VISKHSERIL DLTVEIDGDI STLDGALRRF TSSEILDGDN
501: RYHCSRCNSY ERAQKKLTIL EAPNILTIAL KRYQSGVLGK ISKAVKFPEH LNLSQYMCRT DDSSPVYSLY AVVVHRNVRN ATVSGHYVCY VKDSQGKWHE
601: MDDNKVKPVS VQKVLSRCAY MLLYARCSPR APTSARAKKP KQMARSGSFP SGGGRYRSRH QGGQLSKDDA VHNLTYTLGT SDTSSYPVAP CFSGSNSSSL
701: FSSSDAGSSC TFSSDSTDSA GKSSMEYDRI FGTSGYMCPV VSSAVVPEGD NQSYLRQGSS WNPSSSGHDM DEAGKFARQY QGGYQAGGGA PVGGWETPSF
801: SYADQGKYQG SSSRRNRSFG SSCKLTQQRR STGRAFFYIR SIRERIQGGL GSGLGS

Best Arabidopsis Sequence Match ( AT5G65450.1 )
(BLAST)

001: MMLVFLLIRR QWRSASVRRE EVIRLIALAT EESYLAEEVR PATVDYGGDS VSDVYRCAVC LYPTTTRCSQ CKSVRYCSSK CQILHWRRGH KEECRSPDYD
101: EEKEEYVQSD YDAKESNVDF PSRGTAYESS SNVSVDVACD MSTSRPSIHK VQPRSEAVDF TTSLNIKDNL YETRPLSRKK SRNRTDKVES ASNYSKGKTD
201: AKLRKLGNQN SRRSGDSANM SISDQFLSVG FEEEMNALKH ERITSEPSSA SAAMSSSSTL LLPSKANSKP KVSQASSSGL KTSVQKVVQH FRPPQSSKKS
301: QPSSSIDEMS FSYELFVKLY CDRVELQPFG LVNLGNSCYA NAVLQCLAFT RPLISYLIRG LHSKTCRKKS WCFVCEFEHL ILKARGGESP LSPIKILSKL
401: QKIGKHLGPG KEEDAHEFLR CAVDTMQSVF LKEAPAAGPF AEETTLVGLT FGGYLHSKIK CMACLHKSER PELMMDLTVE IDGDIGSLEE ALAQFTAYEV
501: LDGENRYFCG RCKSYQKAKK KLMILEGPNI LTVVLKRFQS DNFGKLSKPI HFPELLDISP YMSDPNHGDH PVYSLYAVVV HLDAMSTLFS GHYVCYIKTL
601: DGDWFKIDDS NVFPVQLETV LLEGAYMLLY ARDSPRPVSK NGGRKSKQRR NLAAIPSRKG NKKQRDGDNN SLLPRVDWSS GSLSSMFSSS DTTSSCSTKD
701: SSGIENLSDY LFGGVEPVWK WDRHNKSQTF D

Arabidopsis Description

UBP17ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450]
SUBAcon: [mitochondrion,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.