Factsheet for TraesCS5D01G252600.2

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 4
golgi 4
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, vacuole
Any Predictor:	plastid, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G493700.1
TraesCS2B01G521700.1
TraesCS2D01G493600.1
TraesCS4A01G246100.1
TraesCS4B01G069300.1
TraesCS4D01G068100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	TraesCS2A01G493700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2B01G521700.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS2D01G493600.1	AT4G13930.1	23232097
AT4G24560.1	TraesCS4A01G246100.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4B01G069300.1	AT4G37930.1	23232097
AT4G24560.1	TraesCS4D01G068100.1	AT4G37930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G243400.1	Wheat	vacuole	89.61	88.54
TraesCS5A01G246000.3	Wheat	vacuole	93.15	87.63
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	64.86	79.65
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	55.47	54.09
Zm00001d020769_P005	Maize	nucleus	45.3	47.9
OQU89635	Sorghum	vacuole	45.97	45.61
TraesCS7D01G280800.4	Wheat	plastid	47.85	43.65
GSMUA_Achr10P...	Banana	nucleus	18.78	41.87
GSMUA_Achr7P19010_001	Banana	nucleus	20.77	40.87
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	15.8	37.05
GSMUA_Achr10P...	Banana	golgi	18.12	36.44
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	30.17	36.4
CDY14564	Canola	golgi	30.28	35.96
CDY08792	Canola	vacuole	29.72	35.91
GSMUA_Achr5P22990_001	Banana	vacuole	35.58	35.82
Bra024386.1-P	Field mustard	golgi	30.06	35.46
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	28.07	34.32
KRH74502	Soybean	golgi, plasma membrane, vacuole	31.6	30.85
VIT_00s0199g00030.t01	Wine grape	vacuole	30.72	30.79
KRH52893	Soybean	extracellular, golgi, vacuole	29.72	30.29
KRH69660	Soybean	golgi	31.38	30.28
KRH16837	Soybean	golgi	34.7	30.05
KRH72452	Soybean	golgi, plasma membrane	33.48	29.25
AT4G24560.1	Thale cress	extracellular, golgi	31.49	28.27
CDY11021	Canola	golgi	31.49	28.25
CDX92643	Canola	golgi	31.6	28.23
Bra019219.1-P	Field mustard	golgi	31.38	28.06
CDY03441	Canola	golgi	31.38	28.04
CDY34291	Canola	golgi	31.05	27.55
Bra013814.1-P	Field mustard	golgi	30.94	27.45
Solyc04g076210.2.1	Tomato	nucleus	33.04	27.21
KRH62182	Soybean	golgi, vacuole	33.59	26.71
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	35.91	26.53
TraesCS4D01G304300.1	Wheat	cytosol	10.5	25.96
TraesCS7D01G125700.1	Wheat	nucleus	10.28	25.41
TraesCS2D01G517600.1	Wheat	mitochondrion	10.06	24.59
TraesCS6D01G179700.1	Wheat	plasma membrane	25.75	23.85
TraesCS6D01G187000.1	Wheat	nucleus, plastid	10.39	23.04
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	24.31	20.66
TraesCS1D01G331300.1	Wheat	plastid	13.92	19.5
TraesCS1D01G196500.1	Wheat	cytosol	11.27	18.09
TraesCS6D01G250100.1	Wheat	nucleus	14.25	17.46
TraesCS7D01G149800.1	Wheat	nucleus	15.91	15.37
TraesCS1D01G196600.1	Wheat	nucleus	12.93	13.43
TraesCS2D01G129600.2	Wheat	cytosol	11.16	13.1
TraesCS6D01G339500.1	Wheat	nucleus	14.92	13.07

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	SignalP:SignalP-noTM	TMHMM:TMhelix	EnsemblPlantsGene:TraesCS5D01G252600
EnsemblPlants:TraesCS5D01G252600.2	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg	:

Description

No Description!

Coordinates

chr5D:-:358540816..358553556

Molecular Weight (calculated)

99240.8 Da

IEP (calculated)

6.699

GRAVY (calculated)

-0.373

Length

905 amino acids

Sequence
(BLAST)

001: MVSFFAALVA IAVVALVAVM RRAAARKEDV RRTAWIAAEQ AEFAERDAFY YYDHHAAPHW TAPDATGWTA PDATGWTAPP VAWPPVGQVA APPVAWPPVD
101: QMAAPPVAWP AVEQVASTPV AWPPVEQMAA TPVAWPVVEK VAETPVAWPA VEKVAALPVA WPPAVKVAAP QVAWQPVEQV AATQVAWPLV DQVAAPEVSW
201: PRDVHVASPR LEQEATTEPT LAAAAGKKGP CAVCRTPTTF RCKRCKSVKY CAVKCQIAHW RQGHKDECHP VSADAREDTT IKVSSTKKIG RTSSDEESVV
301: TGVEQAAESK EMPREKASNT SEASQQDSKE FTFPQVTGHA ESADCSSSPT FGKPCKVEGA SVSENGSHTQ IPAACDPSEK AEIRVVVPDD LPTTKSLVRQ
401: QTAPTVVRHH PSESALFPYE RFVKLYNFDK VELRPFGLCN LGNSCYANVV LQCLAFTRPL TAYFLEGLHS KHCSQKEWCF LCEFQKLIVE GKRGHSQLSP
501: TGILSHLSDI GSSFGPGKEE DAHEFLRYAI DTMQSASMKE ANANGAHKLA EETTLIQLMF GGYLRSKIKC TKCGVSSEHC ERILDLTVEI DGDISTLEEA
601: LHRFTSSEVL DGDNRYHCTR CKSYERGKKK LTISEAPNIL TIALKRYQSG MFGKINKAIR FPEYLNLSSY MSTTDDCSPV YRLYAVVVHR DVMNSSVSGH
701: YVCYVKDSQG KWYEMDDSQV KPVSLKNVRS ECAYMLLYAR CSPRAPRSLR KLIIAQGLSH TRKARQTAGP ESTCLEGRSY SSRHQVLEPT STSEDSSLFS
801: SSDVGSSGNL SSDNTDSTKN PGSSDQMHPV STVVMPEEHS RQMSSLNPSS STQYADQAEV DRLHQLKHQA SKGVWDEGCE TPSFFYVDQG GLYGCQDPGY
901: SAHPI

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.