Factsheet for GSMUA_Achr10P30230_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 6
nucleus 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr6P06520_001
GSMUA_Achr8P00310_001
GSMUA_Achr9P01620_001
GSMUA_Achr9P07310_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G24560.1	GSMUA_Achr6P06520_001	AT4G13930.1	23232097
AT4G24560.1	GSMUA_Achr8P00310_001	AT4G13930.1	23232097
AT4G24560.1	GSMUA_Achr9P01620_001	AT4G13930.1	23232097
AT4G24560.1	GSMUA_Achr9P07310_001	AT4G13930.1	23232097

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	57.33	66.84
GSMUA_Achr5P22990_001	Banana	vacuole	63.56	31.81
GSMUA_Achr7P05090_001	Banana	vacuole	25.78	24.84
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	39.56	24.05
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	37.33	22.4
KRH52893	Soybean	extracellular, golgi, vacuole	44.0	22.3
GSMUA_Achr7P19170_001	Banana	cytosol	6.44	21.64
CDY08792	Canola	vacuole	36.0	21.63
CDY14564	Canola	golgi	36.22	21.39
Bra024386.1-P	Field mustard	golgi	36.22	21.25
GSMUA_AchrUn_...	Banana	golgi, vacuole	46.0	20.43
VIT_00s0199g00030.t01	Wine grape	vacuole	39.56	19.71
KRH16837	Soybean	golgi	45.11	19.43
KRH74502	Soybean	golgi, plasma membrane, vacuole	39.11	18.99
KRH72452	Soybean	golgi, plasma membrane	43.56	18.92
TraesCS5B01G243400.1	Wheat	vacuole	38.0	18.67
TraesCS7D01G280800.4	Wheat	plastid	40.89	18.55
TraesCS7A01G282200.4	Wheat	plastid	40.67	18.5
KRH69660	Soybean	golgi	38.44	18.44
TraesCS7B01G179000.2	Wheat	plastid	40.67	18.43
Os08t0478500-01	Rice	plastid	39.78	18.3
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	36.44	18.12
AT4G24560.1	Thale cress	extracellular, golgi	40.22	17.96
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	29.33	17.91
CDX92643	Canola	golgi	40.22	17.87
CDY11021	Canola	golgi	39.78	17.74
Bra019219.1-P	Field mustard	golgi	39.78	17.69
Zm00001d020769_P005	Maize	nucleus	33.56	17.64
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	48.0	17.63
CDY03441	Canola	golgi	39.56	17.57
OQU89635	Sorghum	vacuole	35.56	17.54
KRH62182	Soybean	golgi, vacuole	44.0	17.4
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	35.78	17.35
Bra013814.1-P	Field mustard	golgi	39.11	17.25
CDY34291	Canola	golgi	39.11	17.25
TraesCS5A01G246000.3	Wheat	vacuole	36.44	17.05
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	30.89	16.59
Solyc04g076210.2.1	Tomato	nucleus	40.44	16.56
OQU80649	Sorghum	nucleus	28.22	15.76
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	33.78	15.31
GSMUA_Achr2P20080_001	Banana	plasma membrane	30.44	14.56
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	11.33	14.49
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	28.44	13.82
GSMUA_Achr7P17050_001	Banana	plastid	14.67	12.64
GSMUA_Achr7P05330_001	Banana	cytosol	8.0	11.29
GSMUA_Achr8P14390_001	Banana	cytosol	8.89	10.93
GSMUA_Achr1P11380_001	Banana	cytosol	8.89	10.72
GSMUA_Achr10P...	Banana	nucleus	8.89	10.7
GSMUA_Achr10P...	Banana	cytosol	8.0	10.43
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	24.89	9.9
GSMUA_Achr3P04660_001	Banana	nucleus	12.67	9.5
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	12.22	9.39
GSMUA_Achr8P09770_001	Banana	cytosol	8.89	9.35
GSMUA_Achr9P10330_001	Banana	mitochondrion	11.56	8.35
GSMUA_Achr4P01920_001	Banana	nucleus	12.67	5.9
GSMUA_Achr7P19010_001	Banana	nucleus	5.78	5.65
GSMUA_Achr7P19160_001	Banana	mitochondrion	3.33	4.92
Zm00001d050489_P001	Maize	nucleus	4.89	4.81
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	6.22	3.3
GSMUA_Achr10P...	Banana	nucleus	0.44	0.49

Protein Annotations

Gene3D:3.30.60.180	Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr10G30230_001	EnsemblPlants:GSMUA_Achr10P30230_001	EnsemblPlants:GSMUA_Achr10T30230_001	InterPro:IPR002893
InterPro:IPR028889	UniProt:M0RMP7	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360
PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232
SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI00029484C1	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND
SEG:seg	:	:	:	:	:

Description

Putative Ubiquitin carboxyl-terminal hydrolase 17 [Source:GMGC_GENE;Acc:GSMUA_Achr10G30230_001]

Coordinates

chr10:-:32463480..32468591

Molecular Weight (calculated)

48922.2 Da

IEP (calculated)

7.769

GRAVY (calculated)

-0.245

Length

450 amino acids

Sequence
(BLAST)

001: MPLHRDLGLS GAASLVFLLI VPLIAFVVRR RWRLASVRQA EVRRLARLAA EEAARAEMEA ITVFFASSHV AASAAAAVAK DPSARPECPV CLSPATARCA
101: RCKAVRYCSG KCQIIHWRQG HKDECHPPQV SDDHNAVEMV SDRPAASELA YSYNDINKKN KHEESGSMDV SGMETTSGPS VGTPDDTLTV GNLLPLHDSR
201: PGESSSFDSS TSSLGTSLNS RTLRPLAYAS DQLSSNGGAH PVVCYESSKV SNAPRGPVGS PDTYGSIANG MSTSVKRVVK EFTSSKISRL YSSELMLFPY
301: DRFIKLYNSD KIELRPCGLI NCGNSCYANA VLQCLAFTRP LTAYFLEGLH SKICKYKEWC FTCELERLAM KAKEGNSPLS PIGILSHLHN IGSNFGHGQE
401: EDAHEFLRYA IDAMQSVCLM EAGKKPDGPL AEETTLIQQT FGGYLRSKAS

Best Arabidopsis Sequence Match ( AT2G24640.1 )
(BLAST)

001: MHEVGLFVDL NSFTQLILTL FFVSIGLLYF VKRTAAKYFE VGGGSGGFDR DHRRDFMVSD TAECSVCGKA TTKKCSRCKS VRYCSAACQT SDWKSGHKLK
101: CKGFRSTDSS PVRRDDIDFE ASLFGNRSAS KKTRIALVPQ QSQSKATLKP TDVLFPYESF VRYYNWDRPI MAPCGLTNCG NSCFANVVLQ CLSWTRPLVA
201: YLLERGHKRE CRRNDWCFLC EFENHLDRAN YSRFPFSPMN IISRLPNIGG NLGYGRQEDA HELMRFAIDM MQSVCLDEFG GEKVVPPRAQ ETTLIQYIFG
301: GLLQSQVQCT ACSNVSDQYE NMMDLTVEIH GDAVSLEECL DQFTAKEWLQ GDNLYKCDRC DDYVKACKRL SIRCAPNILT IALKRFQGGR FGKLNKRISF
401: PETFDLGPYM SGGGEGSDVY KLYAVIVHLD MLNASFFGHY ICYVKDFRGN WYRIDDSEVE KVELEDVLSQ RAYMLLYSRV QPRPSNLRSE ESQDEKKTDT
501: LNTESNQDGS VESSGVGTND TSVSSLCNGI ISHSEDPEYE KESSLSASVP VSEEGKEVDV KVDTVDSESN RSIDMEHDSG TDHQEEEANG KEDPTVENLA
601: VDSSCLDITT PSPSAATEFI PQENERSDTE SKPLEKEHSD TESNKPLEKE HLDSESKPLE KEHSDTEMID AQ

Arabidopsis Description

UBP19Ubiquitin carboxyl-terminal hydrolase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJA1]
SUBAcon: [endoplasmic reticulum,vacuole]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.