Factsheet for GSMUA_Achr3P04660_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 2
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72298	Soybean	cytosol, plastid	49.67	58.66
GSMUA_Achr4P01920_001	Banana	nucleus	73.83	45.86
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	21.67	36.93
VIT_19s0014g00210.t01	Wine grape	nucleus	53.17	35.68
Os06t0184300-01	Rice	mitochondrion	52.17	33.87
Solyc07g005530.2.1	Tomato	nucleus	51.67	33.59
KRH03060	Soybean	nucleus	50.33	33.44
PGSC0003DMT400028924	Potato	nucleus	51.5	33.37
CDY11838	Canola	nucleus, plastid	45.33	33.21
CDY32735	Canola	nucleus	44.33	33.21
CDX88651	Canola	nucleus, plastid	45.33	33.01
CDY02782	Canola	nucleus	43.83	32.83
Bra006790.1-P	Field mustard	nucleus, plastid	45.33	32.73
VIT_00s0174g00260.t01	Wine grape	nucleus	53.83	32.4
Bra020400.1-P	Field mustard	nucleus	44.5	32.05
Zm00001d045104_P005	Maize	nucleus	48.17	32.0
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	45.0	31.8
CDY57464	Canola	nucleus	44.83	31.72
HORVU7Hr1G030300.1	Barley	nucleus	49.17	31.72
EER89337	Sorghum	nucleus	48.33	31.62
AT5G57990.1	Thale cress	nucleus	45.17	31.55
CDY55010	Canola	nucleus	44.33	31.29
TraesCS7A01G147900.1	Wheat	nucleus	47.83	31.16
TraesCS7B01G051400.2	Wheat	nucleus	48.67	31.1
TraesCS7D01G149800.1	Wheat	nucleus	48.5	31.06
GSMUA_Achr7P05090_001	Banana	vacuole	21.83	28.05
GSMUA_Achr10P...	Banana	cytosol	16.0	27.83
Bra002683.1-P	Field mustard	nucleus	44.67	27.29
GSMUA_Achr1P11380_001	Banana	cytosol	16.5	26.54
TraesCS6D01G339500.1	Wheat	nucleus	45.33	26.33
TraesCS6B01G389500.1	Wheat	nucleus	45.83	25.73
GSMUA_Achr7P05330_001	Banana	cytosol	13.67	25.71
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	45.33	25.4
GSMUA_Achr7P19160_001	Banana	mitochondrion	12.83	25.25
GSMUA_Achr8P14390_001	Banana	cytosol	15.33	25.14
GSMUA_Achr10P...	Banana	nucleus	15.5	24.87
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	24.17	24.74
GSMUA_Achr7P19170_001	Banana	cytosol	5.5	24.63
GSMUA_Achr8P09770_001	Banana	cytosol	17.0	23.83
GSMUA_Achr9P10330_001	Banana	mitochondrion	24.5	23.6
Os02t0795000-01	Rice	nucleus	46.17	23.38
GSMUA_Achr7P17050_001	Banana	plastid	17.67	20.31
GSMUA_Achr7P19010_001	Banana	nucleus	14.83	19.35
GSMUA_Achr10P...	Banana	nucleus	12.83	18.97
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	22.83	16.35
GSMUA_Achr5P22990_001	Banana	vacuole	22.5	15.02
GSMUA_Achr2P20080_001	Banana	plasma membrane	22.67	14.45
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	22.17	14.36
GSMUA_AchrUn_...	Banana	golgi, vacuole	22.5	13.33
GSMUA_Achr10P...	Banana	golgi	9.5	12.67
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	23.33	12.38
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	7.83	12.18

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr3G04660_001	EnsemblPlants:GSMUA_Achr3P04660_001	EnsemblPlants:GSMUA_Achr3T04660_001	InterPro:IPR028889
UniProt:M0SBT4	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033
PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000295D67D	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 23 [Source:GMGC_GENE;Acc:GSMUA_Achr3G04660_001]

Coordinates

chr3:-:2997920..3001793

Molecular Weight (calculated)

65700.8 Da

IEP (calculated)

9.294

GRAVY (calculated)

-0.434

Length

600 amino acids

Sequence
(BLAST)

001: MSAGSSVANK PEGASGSVSQ VEALFQRRIE FHRARKPYSS FSSPDGDFRL ETLNPSSGPD RPGVSAAAAV SSRSGEGRFY EHGLDPELSF RITFRRIGAG
101: LANLGNTCFL NSVIQCLTYT EPFAAYLQSG KHKSSCHTTG FCAMCALQNH VITALQSSGK ILSPSHLVKN LRCISRNFRN SRQEDAHEYM VNLLESMHKC
201: CLPSGVPSES PSAYERSLVH KIFGGRLRSQ VKCMQCSYSS SKFDPFLDLS LEIVKADSLR KALAHFTAVE QLDGGQRQYQ CQRCKEKVRA LKQLTIHKAP
301: YVLTIHLKRF GSHVPGQKID KKVTFEPTLD LKPFVSDQHG GDLKYTLYGV LVHAGWSTHS GHYYCYVRTS SGMWHSLDDN QVRQVSEKIV LVQKAYMLFY
401: VRDRGSTPKG SINTVCKDNI SASAIGKKLI PESSSLVSSG AAQISATERK LSTSESISVK TRTDATNIQS GLVDASSPNP LHQAASTLRK NDNNALSEVP
501: ELHNNTQEVN KDSVVVKAIS KASCENDSPF ISQSGRSDSE KCHRSGGSNG VVKSGVLVAQ PKNSGSPDPE SQKNEIKLIK ERDTAKVTLE MFNHLMLDAG

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.