Factsheet for GSMUA_Achr9P10330_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr3P25160_001
GSMUA_Achr4P08560_001
GSMUA_Achr7P24480_001
GSMUA_AchrUn_...
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	GSMUA_Achr10P...	AT2G42580.1	19000166
AT3G14400.1	GSMUA_Achr3P25160_001	AT2G42580.1	19000166
AT3G14400.1	GSMUA_Achr4P08560_001	AT2G42580.1	19000166
AT3G14400.1	GSMUA_Achr7P24480_001	AT2G42580.1	19000166
AT3G14400.1	GSMUA_AchrUn_...	AT2G42580.1	19000166
AT3G14400.1	GSMUA_AchrUn_...	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d000312_P002	Maize	plastid	28.41	62.99
Os05t0510300-01	Rice	plastid	53.45	51.71
HORVU1Hr1G077630.2	Barley	plastid	53.77	51.62
TraesCS1B01G342600.2	Wheat	plastid	53.45	51.55
TraesCS1A01G329200.2	Wheat	plastid	53.61	51.46
TraesCS1D01G331300.1	Wheat	plastid	53.29	51.39
KXG22316	Sorghum	plastid	52.65	48.45
VIT_19s0093g00560.t01	Wine grape	mitochondrion	48.15	47.24
Zm00001d010710_P002	Maize	plastid	51.69	47.14
KRH43852	Soybean	nucleus	47.67	46.33
KRH13611	Soybean	nucleus	48.31	46.17
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	47.19	42.86
PGSC0003DMT400071055	Potato	mitochondrion	41.73	42.07
AT3G14400.1	Thale cress	mitochondrion	43.66	41.15
CDX75770	Canola	mitochondrion, nucleus	42.38	39.76
Bra027341.1-P	Field mustard	mitochondrion	43.82	39.74
CDX98449	Canola	mitochondrion	43.98	38.92
CDX97571	Canola	mitochondrion	44.14	38.84
Zm00001d000313_P001	Maize	nucleus	22.15	37.3
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	15.73	27.84
GSMUA_Achr7P05330_001	Banana	cytosol	13.8	26.96
GSMUA_Achr10P...	Banana	cytosol	14.61	26.38
GSMUA_Achr7P05090_001	Banana	vacuole	18.78	25.05
GSMUA_Achr7P19160_001	Banana	mitochondrion	12.2	24.92
GSMUA_Achr8P14390_001	Banana	cytosol	14.61	24.86
GSMUA_Achr3P04660_001	Banana	nucleus	23.6	24.5
GSMUA_Achr10P...	Banana	nucleus	14.29	23.8
GSMUA_Achr7P19170_001	Banana	cytosol	4.98	23.13
GSMUA_Achr1P11380_001	Banana	cytosol	13.8	23.06
GSMUA_Achr8P09770_001	Banana	cytosol	14.29	20.79
GSMUA_Achr10P...	Banana	nucleus	12.84	19.7
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	18.46	19.62
GSMUA_Achr7P19010_001	Banana	nucleus	14.29	19.35
GSMUA_Achr7P17050_001	Banana	plastid	14.93	17.82
GSMUA_Achr4P01920_001	Banana	nucleus	24.08	15.53
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	20.22	15.04
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	19.74	14.49
GSMUA_Achr5P22990_001	Banana	vacuole	20.39	14.13
GSMUA_Achr2P20080_001	Banana	plasma membrane	21.03	13.92
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	19.74	13.28
GSMUA_AchrUn_...	Banana	golgi, vacuole	20.22	12.44
GSMUA_Achr10P...	Banana	golgi	8.35	11.56
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	20.87	11.49
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	6.26	10.1

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr9G10330_001	EnsemblPlants:GSMUA_Achr9P10330_001	EnsemblPlants:GSMUA_Achr9T10330_001	InterPro:IPR028889
UniProt:M0TZ42	PFAM:PF00443	ScanProsite:PS00972	PFscan:PS50235	PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002956BA3	InterPro:USP_CS	InterPro:USP_dom	SEG:seg

Description

ubiquitin carboxyl-terminal hydrolase domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr9G10330_001]

Coordinates

chr9:-:6710197..6720548

Molecular Weight (calculated)

69291.1 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.527

Length

623 amino acids

Sequence
(BLAST)

001: MTWHPRCRRG GPPLGLKNLG NSCYLNSVLQ CLTYTPPLAQ FCLSSRHSSL CKSLFANRDK ECPFCILERQ IARSLSLDGP LEAPSKIHKS LALFAEHFRW
101: GRQEDAHEFL RYVIDACHNA CLKIHKRNGG GGTPDGNPKA EGRSGPSTVM KEIFGGALLS QVKCLACKGE SNKSDEIMDI CLDLFQSSSL KDALARFFHP
201: EVLDGNNKYN CGNCKKLSVA RKQMFILRAP NVLVVQLKRF EGIHGGKINR NIEFDEALGL SEFMFSMSQD PEPEYNLFGS IVHSGFSPES GHYYAYIKDA
301: SGRWYCCNDA QVSLSSRQEV LSEKVYILFY VRSNGSPKPS KIVSSCNAYK PSVTNGNDTS SLKSTETLKP TIIKSDGVSS KNTASTMLKN GKTFSSPQFK
401: PINLKNLEIK QAISNGNGNL DLQNKGSANV NFSSDTVEKN NKQTLFLPNV NACTKELDMD AHVEDIEGAA TLNRGFDNGS SSKLETNKHH AIVSTFNTEL
501: SNTKTTENLA SDLPRGNGSH KNQRACGKRH YQEEIEKFKE VLAGEASSEL HSCGWVDQVQ NFMRARKRLC MQESGTSSDN SLIRRHLIND ARKTFISQIP
601: ESLKEHLIEH LRFFSQETPL LDS

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.