Factsheet for PGSC0003DMT400071055

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400063184	Potato	plastid	36.08	100.0
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	94.66	85.28
Zm00001d000312_P002	Maize	plastid	25.4	55.87
VIT_19s0093g00560.t01	Wine grape	mitochondrion	53.4	51.97
KRH43852	Soybean	nucleus	53.07	51.17
KRH13611	Soybean	nucleus	52.91	50.15
AT3G14400.1	Thale cress	mitochondrion	48.87	45.69
Bra027341.1-P	Field mustard	mitochondrion	48.71	43.81
CDX97571	Canola	mitochondrion	48.71	42.51
CDX98449	Canola	mitochondrion	48.22	42.33
CDX75770	Canola	mitochondrion, nucleus	44.98	41.87
GSMUA_Achr9P10330_001	Banana	mitochondrion	42.07	41.73
HORVU1Hr1G077630.2	Barley	plastid	39.81	37.9
Os05t0510300-01	Rice	plastid	39.32	37.73
TraesCS1D01G331300.1	Wheat	plastid	39.16	37.46
TraesCS1B01G342600.2	Wheat	plastid	39.0	37.31
TraesCS1A01G329200.2	Wheat	plastid	39.0	37.13
KXG22316	Sorghum	plastid	39.0	35.6
Zm00001d010710_P002	Maize	plastid	38.84	35.14
PGSC0003DMT400093121	Potato	cytosol	12.46	26.64
PGSC0003DMT400032703	Potato	nucleus	15.37	25.96
PGSC0003DMT400093591	Potato	cytosol	9.39	23.11
PGSC0003DMT400038315	Potato	nucleus	16.18	22.32
Zm00001d000313_P001	Maize	nucleus	13.27	22.16
PGSC0003DMT400033175	Potato	mitochondrion	5.83	21.56
PGSC0003DMT400033184	Potato	cytosol	6.31	21.31
PGSC0003DMT400033182	Potato	cytosol	4.85	21.28
PGSC0003DMT400089939	Potato	cytosol	12.62	20.86
PGSC0003DMT400076065	Potato	endoplasmic reticulum	11.49	20.4
PGSC0003DMT400046008	Potato	cytosol	17.48	20.34
PGSC0003DMT400096420	Potato	mitochondrion	4.69	19.46
PGSC0003DMT400045160	Potato	nucleus	21.2	18.4
PGSC0003DMT400086994	Potato	cytosol	3.88	18.05
PGSC0003DMT400034298	Potato	cytosol	14.24	16.48
PGSC0003DMT400028924	Potato	nucleus	23.95	15.98
PGSC0003DMT400088084	Potato	cytosol	8.58	15.77
PGSC0003DMT400033173	Potato	mitochondrion	8.09	14.08

Protein Annotations

MapMan:19.2.3.1.1.11	Gene3D:3.90.70.10	MEROPS:C19.A13	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1CN55	PFAM:PF00443
EnsemblPlantsGene:PGSC0003DMG400027635	PGSC:PGSC0003DMG400027635	EnsemblPlants:PGSC0003DMT400071055	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002961227	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400027635]

Coordinates

chr7:-:51725682..51731150

Molecular Weight (calculated)

67685.6 Da

IEP (calculated)

9.206

GRAVY (calculated)

-0.463

Length

618 amino acids

Sequence
(BLAST)

001: MAYLQMNWQP NLLSHKRKTG PPLGLKNLGN TCYINSVLQC LTYTPPLAYF CLKSQHSASC DSEAAAASGK KSECPFCILE KRIARSLSLE SALDTPAKIN
101: NCLKIFAQHF RFGRQEDAHE FLRYVIDACH NTCLRLKKLQ QQTKKGGGGG VDGNGNTIVK EIFGGALQSQ VKCLSCGAES NKVDEIMDIS LDVLHSSSLK
201: DALQRFFQPE VLDGNNKYKC ENCKKLVTAR KQMSILQAPN VLVIQLKRFE GIYGGKIDKP IAFEEVLVLS SYMCKASQDL HPEYNLFGTI VHSGFSPDSG
301: HYYAYIKDAV GRWYCCNDSH VSPKILQEVL SEKVYILFFS RTKQRSPPTK TCLSINGSKS NHSNGLAKSK ILTSDLAKAE NEKQVLGHPS EKENVMTSKV
401: SKVHSSPVRE LGIFERSSFK RPTSGNIKMV FHSKESGNRT GDVRASVLTE KEITSLPDRN GVSKSCGNGQ MTRSHALTNG NGNEKLPIVA TSPVADGPLK
501: DYGGSNGKAA GKDSYHKEVT RSSSLANGNG KIQSVATDTS RGSLHRNNGE NSESLAAITS AYRDTSNGHV ESSSISGSKR KLSDQCILLE YDAQSRAKVE
601: ELKKEYATLS LITCIPLP

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.