Factsheet for PGSC0003DMT400096420

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	endoplasmic reticulum
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086994	Potato	cytosol	14.77	16.54
PGSC0003DMT400088084	Potato	cytosol	36.24	16.07
PGSC0003DMT400089939	Potato	cytosol	36.24	14.44
PGSC0003DMT400046008	Potato	cytosol	40.27	11.3
PGSC0003DMT400093121	Potato	cytosol	18.79	9.69
PGSC0003DMT400093591	Potato	cytosol	13.42	7.97
PGSC0003DMT400045160	Potato	nucleus	37.58	7.87
PGSC0003DMT400032703	Potato	nucleus	13.42	5.46
TraesCS1D01G196500.1	Wheat	cytosol	19.46	5.14
TraesCS3B01G442400.1	Wheat	cytosol	20.81	4.98
PGSC0003DMT400071055	Potato	mitochondrion	19.46	4.69
TraesCS1A01G192900.1	Wheat	cytosol	20.13	4.48
Zm00001d047023_P001	Maize	nucleus	18.12	4.35
PGSC0003DMT400038315	Potato	nucleus	12.75	4.24
TraesCS1D01G196600.1	Wheat	nucleus	22.82	3.9
PGSC0003DMT400034298	Potato	cytosol	13.42	3.75
TraesCS1B01G207800.1	Wheat	cytosol, nucleus, plastid	21.48	3.72
PGSC0003DMT400028924	Potato	nucleus	22.82	3.67
OQU92076	Sorghum	nucleus	20.81	3.58
TraesCS2B01G408400.1	Wheat	cytosol	8.05	2.78
PGSC0003DMT400033184	Potato	cytosol	2.68	2.19
PGSC0003DMT400063184	Potato	plastid	2.68	1.79
PGSC0003DMT400033173	Potato	mitochondrion	4.03	1.69
PGSC0003DMT400033175	Potato	mitochondrion	1.34	1.2
PGSC0003DMT400033182	Potato	cytosol	0.67	0.71
PGSC0003DMT400076065	Potato	endoplasmic reticulum	1.34	0.57
CDX87682	Canola	cytosol	0.0	0.0

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1DYE0	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400045991
PGSC:PGSC0003DMG400045991	EnsemblPlants:PGSC0003DMT400096420	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000294EFA6	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400045991]

Coordinates

chr8:-:17360381..17360918

Molecular Weight (calculated)

17164.3 Da

IEP (calculated)

4.884

GRAVY (calculated)

0.090

Length

149 amino acids

Sequence
(BLAST)

001: MKYDLNAIIV HYGPSISSGH YCIFIRYALN EWYKFDDEKV AFVQEDVVLV AEAYIMFYSK RGTSWFSDYI QIHRYFVNFV ISKTSLCIPN HASDVGESNY
101: VVDESSLKPE LNKIDDNDSP INSSSNSIYS RIHVQYIVVV VVVELSILI

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.