Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 3
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400033182 | Potato | cytosol | 34.73 | 41.13 |
| PGSC0003DMT400033184 | Potato | cytosol | 36.53 | 33.33 |
| GSMUA_Achr1P11380_001 | Banana | cytosol | 50.3 | 22.52 |
| CDX72275 | Canola | cytosol | 49.1 | 22.16 |
| PGSC0003DMT400033173 | Potato | mitochondrion | 44.91 | 21.13 |
| Bra024037.1-P | Field mustard | cytosol | 47.9 | 20.0 |
| GSMUA_Achr8P09770_001 | Banana | cytosol | 47.9 | 18.69 |
| Solyc01g068240.2.1 | Tomato | cytosol | 57.48 | 18.01 |
| KRH39864 | Soybean | cytosol | 51.5 | 16.17 |
| KRH23933 | Soybean | cytosol | 51.5 | 15.9 |
| Os07t0661300-01 | Rice | cytosol, plasma membrane | 46.11 | 15.75 |
| CDY23262 | Canola | nucleus | 48.5 | 14.81 |
| PGSC0003DMT400034298 | Potato | cytosol | 46.11 | 14.42 |
| Bra010268.1-P | Field mustard | cytosol | 49.1 | 14.41 |
| AT4G30890.2 | Thale cress | cytosol | 47.31 | 14.34 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 49.7 | 14.07 |
| Bra011230.1-P | Field mustard | endoplasmic reticulum, vacuole | 49.7 | 14.07 |
| CDY36465 | Canola | cytosol | 49.1 | 13.97 |
| VIT_13s0019g01690.t01 | Wine grape | cytosol | 46.11 | 13.92 |
| Zm00001d022414_P001 | Maize | cytosol | 45.51 | 13.77 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 49.1 | 13.74 |
| PGSC0003DMT400032703 | Potato | nucleus | 23.95 | 10.93 |
| TraesCS2A01G127200.3 | Wheat | cytosol | 46.71 | 10.43 |
| PGSC0003DMT400093591 | Potato | cytosol | 15.57 | 10.36 |
| HORVU2Hr1G022340.2 | Barley | cytosol | 46.71 | 10.28 |
| TraesCS2B01G149000.2 | Wheat | cytosol | 46.11 | 9.99 |
| TraesCS2D01G129600.2 | Wheat | cytosol | 46.11 | 9.99 |
| PGSC0003DMT400093121 | Potato | cytosol | 16.17 | 9.34 |
| OQU81355 | Sorghum | cytosol, nucleus, plastid | 4.19 | 8.97 |
| PGSC0003DMT400089939 | Potato | cytosol | 17.96 | 8.02 |
| PGSC0003DMT400038315 | Potato | nucleus | 20.96 | 7.81 |
| PGSC0003DMT400046008 | Potato | cytosol | 20.96 | 6.59 |
| Zm00001d007096_P007 | Maize | mitochondrion | 44.91 | 6.34 |
| PGSC0003DMT400088084 | Potato | cytosol | 12.57 | 6.25 |
| PGSC0003DMT400071055 | Potato | mitochondrion | 21.56 | 5.83 |
| PGSC0003DMT400045160 | Potato | nucleus | 20.96 | 4.92 |
| PGSC0003DMT400076065 | Potato | endoplasmic reticulum | 10.18 | 4.89 |
| PGSC0003DMT400086994 | Potato | cytosol | 2.99 | 3.76 |
| PGSC0003DMT400028924 | Potato | nucleus | 19.76 | 3.56 |
| PGSC0003DMT400096420 | Potato | mitochondrion | 1.2 | 1.34 |
| PGSC0003DMT400063184 | Potato | plastid | 0.0 | 0.0 |
Protein Annotations
| EntrezGene:107062601 | Gene3D:3.90.70.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 |
| GO:GO:0036459 | UniProt:M1AYQ1 | PFAM:PF00443 | EnsemblPlantsGene:PGSC0003DMG400012741 | PGSC:PGSC0003DMG400012741 | EnsemblPlants:PGSC0003DMT400033175 |
| PANTHER:PTHR44747 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | UniParc:UPI000295183E | RefSeq:XP_015168915.1 |
Description
Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400012741]
Coordinates
chr10:+:17198915..17199418
Molecular Weight (calculated)
18529.2 Da
IEP (calculated)
7.826
GRAVY (calculated)
-0.126
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNCLPKAQL CSHKNSGLRS FKLECHYWGA GQEPCKSERE QSLCDCSITF GIHLDISYEA VHNILDSLCL FSAPETLEGY RTTVGMVGVA TASKSISIHT
101: LPKMMILHLK RFGYGSYGSN KLHKHVHFPL ELVHGLSLVQ EENAHVYAIC YFHSFHNQTA SGVKSSS
101: LPKMMILHLK RFGYGSYGSN KLHKHVHFPL ELVHGLSLVQ EENAHVYAIC YFHSFHNQTA SGVKSSS
001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
Arabidopsis Description
UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.