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Potato
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 2
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Solyc11g065210.1.1 Tomato cytosol 95.51 95.51
GSMUA_Achr1P11380_001 Banana cytosol 48.13 68.9
GSMUA_Achr8P09770_001 Banana cytosol 46.44 57.94
Os07t0661300-01 Rice cytosol, plasma membrane 44.57 48.67
Zm00001d022414_P001 Maize cytosol 50.19 48.55
PGSC0003DMT400033182 Potato cytosol 12.73 48.23
PGSC0003DMT400033175 Potato mitochondrion 14.42 46.11
PGSC0003DMT400033184 Potato cytosol 15.73 45.9
PGSC0003DMT400033173 Potato mitochondrion 23.78 35.77
TraesCS2A01G127200.3 Wheat cytosol 48.88 34.89
HORVU2Hr1G022340.2 Barley cytosol 48.88 34.39
TraesCS2D01G129600.2 Wheat cytosol 48.31 33.46
TraesCS2B01G149000.2 Wheat cytosol 48.13 33.33
PGSC0003DMT400032703 Potato nucleus 17.6 25.68
Zm00001d007096_P007 Maize mitochondrion 49.25 22.23
PGSC0003DMT400093121 Potato cytosol 10.3 19.03
PGSC0003DMT400093591 Potato cytosol 8.8 18.73
PGSC0003DMT400076065 Potato endoplasmic reticulum 11.61 17.82
PGSC0003DMT400038315 Potato nucleus 14.79 17.63
PGSC0003DMT400089939 Potato cytosol 11.05 15.78
PGSC0003DMT400086994 Potato cytosol 3.75 15.04
PGSC0003DMT400046008 Potato cytosol 14.23 14.31
PGSC0003DMT400071055 Potato mitochondrion 16.48 14.24
PGSC0003DMT400096420 Potato mitochondrion 3.75 13.42
PGSC0003DMT400045160 Potato nucleus 16.67 12.5
PGSC0003DMT400088084 Potato cytosol 7.3 11.61
PGSC0003DMT400028924 Potato nucleus 18.73 10.8
PGSC0003DMT400063184 Potato plastid 0.19 0.45
Protein Annotations
EntrezGene:102580352MapMan:19.2.3.1.1.10Gene3D:3.90.70.10MEROPS:C19.A14GO:GO:0003674GO:GO:0003824
GO:GO:0006464GO:GO:0006511GO:GO:0008150GO:GO:0008152GO:GO:0009056GO:GO:0009987
GO:GO:0016579GO:GO:0016787GO:GO:0019538GO:GO:0036459InterPro:IPR028889UniProt:M1B0G0
PFAM:PF00443EnsemblPlantsGene:PGSC0003DMG400013186PGSC:PGSC0003DMG400013186EnsemblPlants:PGSC0003DMT400034298ScanProsite:PS00972ScanProsite:PS00973
PFscan:PS50235PANTHER:PTHR44747InterPro:Papain_like_cys_pep_sfInterPro:Peptidase_C19_UCHSUPFAM:SSF54001UniParc:UPI0002954DCA
InterPro:USP_CSInterPro:USP_domRefSeq:XP_006362319.1SEG:seg::
Description
Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400013186]
Coordinates
chr11:+:36652524..36661214
Molecular Weight (calculated)
58952.8 Da
IEP (calculated)
6.597
GRAVY (calculated)
-0.306
Length
534 amino acids
Sequence
(BLAST)
001: MNDQKVLIFG SFTEDEIKTL QSQPTTDVGI TFGSLDSATL KSVGIFDTKL TEFDHSKKLQ PSELVHRANV TEAHSNTGKT KKSIGNTVKE YGSSSFTNPA
101: YNGSVLHPTV NTGSAYDSSE KSSLLQSAAD NVSELSSSVH DVHLTNQLKN YNLVNGRHTS LNASSNGSAV VFRSFLPRGL VNLGNLCFLN ATLQALLSCS
201: PFVHLLQELK TRDITEAGYP TLHAFVQFIS DFGIYIDPSM KKKETIVPEI GLPFRPLMFE SVLKNFTPDV ANSLTGRPRQ EDVQEFLSFL MHQMHDELLK
301: LEGQVPNGIG RNSSLVSSPD DEEEDDDWET VGPRNKTAVT RTQSFVPSKL SEIFGGQLKS VVKAKGNKAS ATVQPFLLLH LNIYPEPICS IEDALRMFSA
401: PEALEGYRTS AAGKAEVVSA SKSVKILELS DIMVLHLMRF SYESEGSTKL HKPVHFPLEL VFGRELLDSP TEGRKYELVA TITHHGRDPS KGHYTADARH
501: PSGKWLRYDD VSVTAIPTSK VLHDQAYVLF YKQL
Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)
001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
Arabidopsis Description
UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.