Factsheet for PGSC0003DMT400038315

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400086994	Potato	cytosol	23.88	80.45
Solyc08g068810.2.1	Tomato	cytosol	94.2	76.87
GSMUA_Achr7P05330_001	Banana	cytosol	43.75	61.44
VIT_04s0008g06860.t01	Wine grape	nucleus	71.43	57.87
KRH15753	Soybean	nucleus	65.4	52.89
KRH05289	Soybean	nucleus	65.4	52.79
Bra028566.1-P	Field mustard	cytosol	58.04	51.59
AT5G10790.1	Thale cress	cytosol	58.04	46.68
CDX85744	Canola	cytosol	58.48	45.02
CDY40119	Canola	nucleus	58.04	44.52
PGSC0003DMT400032703	Potato	nucleus	20.54	25.14
PGSC0003DMT400093121	Potato	cytosol	14.29	22.15
PGSC0003DMT400033175	Potato	mitochondrion	7.81	20.96
PGSC0003DMT400033182	Potato	cytosol	6.25	19.86
PGSC0003DMT400093591	Potato	cytosol	10.27	18.33
PGSC0003DMT400089939	Potato	cytosol	14.96	17.91
PGSC0003DMT400076065	Potato	endoplasmic reticulum	13.62	17.53
PGSC0003DMT400033184	Potato	cytosol	7.14	17.49
PGSC0003DMT400046008	Potato	cytosol	20.09	16.95
PGSC0003DMT400071055	Potato	mitochondrion	22.32	16.18
PGSC0003DMT400034298	Potato	cytosol	17.63	14.79
PGSC0003DMT400045160	Potato	nucleus	22.54	14.19
PGSC0003DMT400096420	Potato	mitochondrion	4.24	12.75
PGSC0003DMT400033173	Potato	mitochondrion	9.82	12.39
PGSC0003DMT400088084	Potato	cytosol	9.15	12.2
PGSC0003DMT400028924	Potato	nucleus	22.54	10.91
PGSC0003DMT400063184	Potato	plastid	0.22	0.45

Protein Annotations

MapMan:15.3.4.2.2	MapMan:19.2.3.1.1.8	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1B6M7	PFAM:PF00443
EnsemblPlantsGene:PGSC0003DMG400014785	PGSC:PGSC0003DMG400014785	EnsemblPlants:PGSC0003DMT400038315	ScanProsite:PS00972	PFscan:PS50235	PANTHER:PTHR43961
PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000296F4FC	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400014785]

Coordinates

chr8:+:44232076..44235045

Molecular Weight (calculated)

51930.1 Da

IEP (calculated)

7.747

GRAVY (calculated)

-0.454

Length

448 amino acids

Sequence
(BLAST)

001: MERAELYCSV CCDQVYDPDF DKSVMCKHIK GFSRSENGVE ESEMRLSKRR RLSFGMDLDS KNMKRLFIRK SKSCFPLGLR GLNNLGNTCF MNSVLQVLLH
101: APPLRNYFLS DRHNREICRK MSTDRLCLPC DIDLMFSAVF SGDRTPYSPA QFLYSWWQHS ENHATYEQQD AHEFFISMLD KIHDKEGKAS LAIKDNRDCQ
201: CIAHRAFYGL LRSDVTCASC GFTSTTHDPC MDVSLDLSAC NSSRKDFASK SSKPNESLVG CLDLFTRPEK LGSDQKLYCE NCHEKQDALK QMSIKKLPLV
301: LCFHIKRFEH SPTRKMSRKI DRHVQFPLSL DMKPYLSSSI VRKRYGNRIF SFDSDESDAS TEFEIFAVVT HSGMLESGHY VTYLHLRNQW YKCDDTWITE
401: VHEEVVRASQ CYLIYYVQKM LYHKSCEDFS CQPMSLRAET FVPITGCC

Best Arabidopsis Sequence Match ( AT5G10790.1 )
(BLAST)

001: MSARISFLKN PDPCNHLSDY KLRYGTDGYK SFNNLFRCFN DARIKIKLQG IDIPRCSYCS VYQKRLYICL ICRSISCSSH ILLHTQLNKG HDIAIDVERS
101: ELYCCACIDQ VYDSEFDEVV VSKQLFGLGM SVKSGADVVA VRSNKKRRLD SQLIIGSNFL VSPRDRREKW TFPLGLRGLN NLGSTCFMNA VLQALVHAPP
201: LRNFWLSGQH NRDLCPRRTM GLLCLPCDLD VIFSAMFSGD RTPYSPAHLL YSWWQHSTNL ATYEQQDSHE FFISLLDRIH ENEGKSKCLY QDNEECQCIT
301: HKAFSGLLRS DVTCTTCGST STTYDPFIDI SLTLDSMNGF SPADCRKNRY SGGPSVNAIM PTLSGCLDFF TRSEKLGPDQ KLNCQSCGEK RESSKQMSIR
401: RLPLLLCLHV KRFEHSLTRK TSRKIDSYLQ YPFRLNMSPY LSSSIIGKRF GNRIFAFDGE GEYDSSSSSS PSAEFEIFAV VTHKGMLESG HYVTYLRLKG
501: LWYRCDDAWI NEVEEEVVRG CECYMLFYAQ ETVIQKAHKE LSYQVISMAD AFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.