Factsheet for PGSC0003DMT400032703

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g105240.2.1	Tomato	nucleus	98.09	98.09
GSMUA_Achr10P...	Banana	cytosol	83.88	88.99
KRH31299	Soybean	nucleus	89.34	88.62
KRH59329	Soybean	nucleus	89.07	88.35
KRG97572	Soybean	nucleus	88.8	88.08
KRH43175	Soybean	nucleus	88.8	88.08
AT2G22310.1	Thale cress	nucleus	86.34	86.58
CDX69375	Canola	nucleus	87.16	85.98
GSMUA_Achr8P14390_001	Banana	cytosol	85.79	85.79
AT4G39910.1	Thale cress	nucleus	86.89	85.71
CDY68864	Canola	nucleus	86.89	85.48
Bra010647.1-P	Field mustard	nucleus	86.89	85.48
EES12269	Sorghum	cytosol	85.52	85.05
Os04t0452400-01	Rice	nucleus	85.25	85.01
CDY13770	Canola	nucleus	82.51	84.83
Zm00001d003476_P002	Maize	cytosol	85.25	84.78
TraesCS2A01G340100.1	Wheat	cytosol	85.25	84.32
Zm00001d025570_P003	Maize	nucleus	84.7	84.24
Bra038533.1-P	Field mustard	nucleus	81.69	84.23
CDX76934	Canola	nucleus	81.15	83.9
Os03t0190800-01	Rice	cytosol	83.61	83.61
Zm00001d028005_P001	Maize	nucleus	82.79	82.79
GSMUA_Achr7P19160_001	Banana	mitochondrion	68.85	82.62
HORVU4Hr1G078590.1	Barley	cytosol	82.51	82.51
TraesCS4B01G306100.1	Wheat	cytosol	82.24	82.24
EER92723	Sorghum	nucleus	82.24	82.24
TraesCS4D01G304300.1	Wheat	cytosol	81.97	81.97
TraesCS4A01G406600.1	Wheat	cytosol	81.97	81.97
TraesCS7D01G125700.1	Wheat	nucleus	81.69	81.69
GSMUA_Achr10P...	Banana	nucleus	83.33	81.55
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	78.96	80.73
CDY63898	Canola	nucleus	86.61	79.65
HORVU2Hr1G079230.7	Barley	mitochondrion	84.97	75.12
Bra011823.1-P	Field mustard	nucleus	86.07	71.43
Zm00001d016918_P001	Maize	plastid	75.96	66.67
TraesCS6A01G203500.1	Wheat	nucleus, plastid	73.5	65.93
TraesCS6D01G187000.1	Wheat	nucleus, plastid	73.22	65.69
EES07024	Sorghum	mitochondrion	74.86	65.39
CDY68683	Canola	endoplasmic reticulum, vacuole	86.89	65.3
HORVU6Hr1G050090.1	Barley	nucleus, plastid	72.68	65.2
TraesCS6B01G223900.1	Wheat	plastid	71.86	62.77
Os02t0573400-01	Rice	nucleus	71.04	62.65
PGSC0003DMT400033175	Potato	mitochondrion	10.93	23.95
PGSC0003DMT400093591	Potato	cytosol	15.3	22.31
PGSC0003DMT400093121	Potato	cytosol	17.49	22.15
PGSC0003DMT400038315	Potato	nucleus	25.14	20.54
PGSC0003DMT400033182	Potato	cytosol	7.38	19.15
PGSC0003DMT400033184	Potato	cytosol	9.02	18.03
PGSC0003DMT400034298	Potato	cytosol	25.68	17.6
PGSC0003DMT400089939	Potato	cytosol	16.94	16.58
PGSC0003DMT400086994	Potato	cytosol	6.01	16.54
PGSC0003DMT400046008	Potato	cytosol	22.95	15.82
PGSC0003DMT400071055	Potato	mitochondrion	25.96	15.37
PGSC0003DMT400076065	Potato	endoplasmic reticulum	13.93	14.66
PGSC0003DMT400033173	Potato	mitochondrion	14.21	14.65
PGSC0003DMT400045160	Potato	nucleus	26.23	13.48
PGSC0003DMT400096420	Potato	mitochondrion	5.46	13.42
PGSC0003DMT400088084	Potato	cytosol	11.48	12.5
PGSC0003DMT400028924	Potato	nucleus	25.14	9.94
PGSC0003DMT400063184	Potato	plastid	0.27	0.45

Protein Annotations

EntrezGene:102579768	MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	MEROPS:C19.008	GO:GO:0003674	GO:GO:0003824
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1AXV1
PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400012557	PGSC:PGSC0003DMG400012557	EnsemblPlants:PGSC0003DMT400032703	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
UniParc:UPI0002954222	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_006351775.1	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400012557]

Coordinates

chr1:-:81932860..81937695

Molecular Weight (calculated)

41708.3 Da

IEP (calculated)

6.692

GRAVY (calculated)

-0.435

Length

366 amino acids

Sequence
(BLAST)

001: MGATGSKLEK ALGDQFPEGE RYFGLENFGN TCYCNSVLQA LYFCVPFREQ LLEYYANNKS PPEAEENLLT CLAELFSQIS SQKKKTGVIA PRRFVQRVRK
101: QNELFRGYMH QDAHEFLNFL LNELVDILEK ESHAAKSLAA SSPEKVSNGT CNGHANGVKK EPLVTWVHKN FQGILTNETR CLRCETVTAR DETFFDLSLD
201: IEQNSSITSC LKNFSSTETL NAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTTENTDS EYSLFAVVVH
301: VGSGPNHGHY VSLVKSHNHW LFFDDENAEI IDESAVQTFF GSAQEYSSNT DHGYILFYES LAASKS

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.