Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT4G39910.1 | Thale cress | nucleus | 92.88 | 91.37 |
| CDY13770 | Canola | nucleus | 88.22 | 90.45 |
| Bra038533.1-P | Field mustard | nucleus | 87.67 | 90.14 |
| CDX76934 | Canola | nucleus | 86.85 | 89.55 |
| KRH59329 | Soybean | nucleus | 90.14 | 89.16 |
| VIT_07s0141g00230.t01 | Wine grape | nucleus | 89.86 | 88.89 |
| KRH43175 | Soybean | nucleus | 89.86 | 88.89 |
| GSMUA_Achr10P... | Banana | cytosol | 83.84 | 88.7 |
| KRH31299 | Soybean | nucleus | 89.59 | 88.62 |
| KRG97572 | Soybean | nucleus | 89.32 | 88.35 |
| PGSC0003DMT400032703 | Potato | nucleus | 86.58 | 86.34 |
| GSMUA_Achr8P14390_001 | Banana | cytosol | 83.84 | 83.61 |
| GSMUA_Achr7P19160_001 | Banana | mitochondrion | 68.77 | 82.3 |
| Zm00001d028005_P001 | Maize | nucleus | 82.47 | 82.24 |
| HORVU4Hr1G078590.1 | Barley | cytosol | 81.92 | 81.69 |
| TraesCS4B01G306100.1 | Wheat | cytosol | 81.92 | 81.69 |
| EER92723 | Sorghum | nucleus | 81.64 | 81.42 |
| TraesCS4D01G304300.1 | Wheat | cytosol | 81.64 | 81.42 |
| Os03t0190800-01 | Rice | cytosol | 81.64 | 81.42 |
| TraesCS4A01G406600.1 | Wheat | cytosol | 81.64 | 81.42 |
| TraesCS7D01G125700.1 | Wheat | nucleus | 81.37 | 81.15 |
| GSMUA_Achr10P... | Banana | nucleus | 81.37 | 79.41 |
| VIT_09s0070g00500.t01 | Wine grape | golgi, mitochondrion, nucleus, peroxisome | 76.16 | 77.65 |
| AT4G30890.2 | Thale cress | cytosol | 25.48 | 16.88 |
| AT5G10790.1 | Thale cress | cytosol | 24.38 | 15.98 |
| AT4G31670.1 | Thale cress | endoplasmic reticulum, golgi | 26.03 | 15.06 |
| AT3G14400.1 | Thale cress | mitochondrion | 26.58 | 14.67 |
| AT2G24640.1 | Thale cress | endoplasmic reticulum, vacuole | 26.03 | 14.14 |
| AT4G17895.1 | Thale cress | nucleus | 26.3 | 13.81 |
| AT5G46740.1 | Thale cress | nucleus, plastid | 26.58 | 13.25 |
| AT5G65450.2 | Thale cress | endoplasmic reticulum, golgi, mitochondrion, nucleus | 26.85 | 13.07 |
| AT5G57990.1 | Thale cress | nucleus | 25.75 | 10.94 |
| AT1G17110.2 | Thale cress | endoplasmic reticulum, plasma membrane | 26.03 | 10.24 |
| AT4G24560.1 | Thale cress | extracellular, golgi | 24.66 | 8.93 |
Protein Annotations
| MapMan:19.2.3.1.1.2 | Gene3D:3.90.70.10 | EntrezGene:816763 | UniProt:A0A178W1M0 | ProteinID:AAD23612.1 | ProteinID:AEC07291.1 |
| ArrayExpress:AT2G22310 | EnsemblPlantsGene:AT2G22310 | RefSeq:AT2G22310 | TAIR:AT2G22310 | RefSeq:AT2G22310-TAIR-G | EnsemblPlants:AT2G22310.1 |
| TAIR:AT2G22310.1 | Symbol:ATUBP4 | EMBL:AY048261 | EMBL:AY072625 | EMBL:AY087731 | Unigene:At.71036 |
| MEROPS:C19.092 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0006508 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008233 | GO:GO:0008234 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0036459 | InterPro:IPR028889 | RefSeq:NP_565532.1 | ProteinID:OAP11445.1 | PFAM:PF00443 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 |
| ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50235 | PANTHER:PTHR43942 | PANTHER:PTHR43942:SF5 | InterPro:Papain_like_cys_pep_sf |
| InterPro:Peptidase_C19_UCH | UniProt:Q8LAM0 | SUPFAM:SSF54001 | EMBL:U76846 | Symbol:UBP4 | UniParc:UPI000009C85D |
| InterPro:USP_CS | InterPro:USP_dom | : | : | : | : |
Description
UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
Coordinates
chr2:-:9476578..9478959
Molecular Weight (calculated)
41848.7 Da
IEP (calculated)
6.392
GRAVY (calculated)
-0.379
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.