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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • plastid 3
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY57464 Canola nucleus 69.5 70.4
CDX88651 Canola nucleus, plastid 67.4 70.27
CDY11838 Canola nucleus, plastid 66.82 70.09
Bra006790.1-P Field mustard nucleus, plastid 67.4 69.68
CDY55010 Canola nucleus 67.87 68.59
CDY02782 Canola nucleus 62.28 66.79
CDY32735 Canola nucleus 61.47 65.92
Bra020400.1-P Field mustard nucleus 62.75 64.71
Bra002683.1-P Field mustard nucleus 69.62 60.9
KRH72298 Soybean cytosol, plastid 32.71 55.31
GSMUA_Achr3P04660_001 Banana nucleus 31.55 45.17
KRH03060 Soybean nucleus 41.56 39.53
VIT_19s0014g00210.t01 Wine grape nucleus 40.51 38.93
VIT_00s0174g00260.t01 Wine grape nucleus 43.66 37.61
Solyc07g005530.2.1 Tomato nucleus 40.16 37.38
PGSC0003DMT400028924 Potato nucleus 40.05 37.15
Os06t0184300-01 Rice mitochondrion 37.37 34.74
TraesCS7A01G147900.1 Wheat nucleus 37.14 34.64
HORVU7Hr1G030300.1 Barley nucleus 37.37 34.52
TraesCS7D01G149800.1 Wheat nucleus 37.6 34.47
TraesCS7B01G051400.2 Wheat nucleus 37.6 34.4
EER89337 Sorghum nucleus 36.2 33.91
Zm00001d045104_P005 Maize nucleus 35.04 33.33
GSMUA_Achr4P01920_001 Banana nucleus 37.49 33.33
GSMUA_Achr6P01970_001 Banana nucleus, plastid 30.85 31.21
TraesCS6D01G339500.1 Wheat nucleus 33.41 27.78
TraesCS6B01G389500.1 Wheat nucleus 33.64 27.03
TraesCS6A01G357500.1 Wheat mitochondrion, nucleus 33.29 26.7
AT2G22310.1 Thale cress nucleus 10.94 25.75
Os02t0795000-01 Rice nucleus 35.39 25.65
AT4G39910.1 Thale cress nucleus 10.83 25.07
AT3G14400.1 Thale cress mitochondrion 16.76 21.79
AT4G31670.1 Thale cress endoplasmic reticulum, golgi 14.9 20.29
AT5G46740.1 Thale cress nucleus, plastid 17.23 20.22
AT2G24640.1 Thale cress endoplasmic reticulum, vacuole 15.72 20.09
AT4G17895.1 Thale cress nucleus 15.83 19.57
AT5G10790.1 Thale cress cytosol 12.11 18.67
AT4G30890.2 Thale cress cytosol 11.41 17.79
AT5G65450.2 Thale cress endoplasmic reticulum, golgi, mitochondrion, nucleus 15.25 17.47
AT1G17110.2 Thale cress endoplasmic reticulum, plasma membrane 16.3 15.09
AT4G24560.1 Thale cress extracellular, golgi 16.18 13.79
Protein Annotations
MapMan:19.2.3.1.1.9Gene3D:3.90.70.10EntrezGene:835910ProteinID:AED96982.1EMBL:AF302671ArrayExpress:AT5G57990
EnsemblPlantsGene:AT5G57990RefSeq:AT5G57990TAIR:AT5G57990RefSeq:AT5G57990-TAIR-GEnsemblPlants:AT5G57990.1TAIR:AT5G57990.1
Unigene:At.22531ProteinID:BAB08869.1MEROPS:C19.A12GO:GO:0003674GO:GO:0003824GO:GO:0006464
GO:GO:0006508GO:GO:0006511GO:GO:0008150GO:GO:0008152GO:GO:0008233GO:GO:0008234
GO:GO:0009056GO:GO:0009987GO:GO:0016579GO:GO:0016787GO:GO:0019538GO:GO:0036459
InterPro:IPR028889RefSeq:NP_568873.1PFAM:PF00443PO:PO:0000013PO:PO:0000037PO:PO:0000084
PO:PO:0000230PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185
PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103PO:PO:0007115
PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005PO:PO:0009006
PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030PO:PO:0009031
PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030PO:PO:0020038
PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025281ScanProsite:PS00972ScanProsite:PS00973
PFscan:PS50235PANTHER:PTHR44033PANTHER:PTHR44033:SF1InterPro:Papain_like_cys_pep_sfInterPro:Peptidase_C19_UCHUniProt:Q9FPS4
SUPFAM:SSF54001Symbol:UBP23UniParc:UPI00001628A1InterPro:USP_CSInterPro:USP_domSEG:seg
Description
UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
Coordinates
chr5:-:23469924..23474172
Molecular Weight (calculated)
94908.2 Da
IEP (calculated)
9.704
GRAVY (calculated)
-0.500
Length
859 amino acids
Sequence
(BLAST)
001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.