Factsheet for Solyc07g005530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400028924	Potato	nucleus	93.17	92.87
KRH72298	Soybean	cytosol, plastid	33.15	60.24
GSMUA_Achr3P04660_001	Banana	nucleus	33.59	51.67
VIT_19s0014g00210.t01	Wine grape	nucleus	45.72	47.2
VIT_00s0174g00260.t01	Wine grape	nucleus	49.3	45.64
KRH03060	Soybean	nucleus	44.42	45.4
CDY11838	Canola	nucleus, plastid	38.79	43.71
CDX88651	Canola	nucleus, plastid	38.46	43.08
Bra006790.1-P	Field mustard	nucleus, plastid	38.46	42.72
CDY57464	Canola	nucleus	37.92	41.27
CDY55010	Canola	nucleus	37.81	41.06
CDY02782	Canola	nucleus	35.21	40.57
AT5G57990.1	Thale cress	nucleus	37.38	40.16
CDY32735	Canola	nucleus	34.45	39.7
Bra020400.1-P	Field mustard	nucleus	35.21	39.02
GSMUA_Achr4P01920_001	Banana	nucleus	40.3	38.51
Os06t0184300-01	Rice	mitochondrion	37.49	37.45
HORVU7Hr1G030300.1	Barley	nucleus	37.05	36.77
Zm00001d045104_P005	Maize	nucleus	35.97	36.77
Bra002683.1-P	Field mustard	nucleus	39.11	36.76
EER89337	Sorghum	nucleus	36.4	36.64
TraesCS7A01G147900.1	Wheat	nucleus	36.51	36.59
TraesCS7B01G051400.2	Wheat	nucleus	37.16	36.53
TraesCS7D01G149800.1	Wheat	nucleus	37.05	36.5
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	30.99	33.69
TraesCS6D01G339500.1	Wheat	nucleus	35.43	31.66
Solyc09g015600.1.1	Tomato	extracellular	10.51	31.09
TraesCS6B01G389500.1	Wheat	nucleus	35.43	30.59
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	35.43	30.53
Solyc09g015580.1.1	Tomato	vacuole	10.18	30.23
Solyc08g048410.1.1	Tomato	cytosol	5.42	29.94
Os02t0795000-01	Rice	nucleus	36.84	28.69
Solyc08g005080.1.1	Tomato	cytosol	14.3	27.22
Solyc10g047480.1.1	Tomato	nucleus	13.98	26.88
Solyc04g056290.2.1	Tomato	nucleus	10.73	26.83
Solyc09g017990.1.1	Tomato	plastid	13.33	25.79
Solyc01g105240.2.1	Tomato	nucleus	9.97	25.14
Solyc09g017980.1.1	Tomato	extracellular	5.63	25.12
Solyc08g048310.1.1	Tomato	extracellular, vacuole	5.85	25.0
Solyc09g015610.1.1	Tomato	cytosol	3.36	24.6
Solyc07g007640.1.1	Tomato	cytosol	6.18	24.05
Solyc08g023360.1.1	Tomato	extracellular	6.61	24.02
Solyc08g021830.1.1	Tomato	cytosol	8.88	23.43
Solyc08g021790.1.1	Tomato	extracellular, vacuole	5.85	23.08
Solyc12g096430.1.1	Tomato	nucleus, plastid	15.49	22.99
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	16.79	22.59
Solyc02g005600.1.1	Tomato	vacuole	11.81	22.34
Solyc08g076910.2.1	Tomato	nucleus	16.36	21.15
Solyc08g069050.2.1	Tomato	extracellular	17.01	20.21
Solyc01g068240.2.1	Tomato	cytosol	11.27	19.51
Solyc11g065210.1.1	Tomato	cytosol	11.27	19.48
Solyc08g068810.2.1	Tomato	cytosol	11.48	19.31
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	13.65	13.04
Solyc04g076210.2.1	Tomato	nucleus	15.38	12.92

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	MEROPS:C19.A12	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4CB25	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc07g005530.2	EnsemblPlants:Solyc07g005530.2.1	UniParc:UPI000276BFB4	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 23 [Source:Projected from Arabidopsis thaliana (AT5G57990) UniProtKB/Swiss-Prot;Acc:Q9FPS4]

Coordinates

chr7:+:421123..429027

Molecular Weight (calculated)

100989.0 Da

IEP (calculated)

9.905

GRAVY (calculated)

-0.559

Length

923 amino acids

Sequence
(BLAST)

001: MGEAIIDKME ENLGQEISGL IGSDPGLDTS SSVFHRKIEF HLARKPFNGF ISGKNNGGFQ LETLNPSSET RKENGSLVGA GKKGGGDVVM ESNGMDPEVS
101: FGIAFRKIMR IGAGLQNLGN TCFLNSVLQC LTYTEPLAAY LESGKHQSSC RMAGFCALCA IQKHVSRALQ ATGKILAPKD LVSNLRCISR NFRNARQEDA
201: HEYMVNLLES MHKCCLPSGV PSESPSAYEK SLVHKIFGGR LRSQVQCMQC KFCSDKFDPF LDLSLEILRA DSLLKALDHF TARELLDGGQ RQYQCQQCKQ
301: KVKATKRLTI DRAPHVLTVH LKRFGSHVPG QKIDKKIHYG PTLDLKHFVS DTYSGELKYT LYGVLVHAGW STHSGHYYCF VRTSSGNWYS LDDNQVVQVS
401: ERKVLEQKAY MLFYVRDKKS PVPKKSVDVA RNDNVITNGI GNKISSNHSQ RFKDTAQNGF HVKNEGSLSC TKDQRETLSA EVSKGTSTKD LTPPKVNGAV
501: VNGFSSHGGA IQPENLPKVQ ETGDSVKDPS VVDAEDGPSL LKANPAVPVC NGTHRLDNKG DARCGDSTPL PNGNVTIKEL TCSAAIPFHF SSVNSDKDPS
601: TPAKLLNKQV ECSKADTNIQ VVKGISNGSL GGSAVEVNND VGQRKAVAES AGVLSQPTMT SSAEKVAIDK ACLKAKKKSF KSRVTKLHLS FMILDPALGL
701: NRKKKRMNHR IGKRKRSNPS SMDESNSDLG PSTSKLSHTL VSSPMQSQRK KSKLGSNEKV SSTAGHNGDL LRNTVNDERV VNNGTVLAND KQPQKSSRFA
801: PVGSQGVDNR QSTDSKETKV VATRKGLLNM LTRGLESSVA RWDDVEVRSL KGVEAQNGNC VTIGYIGDEW DEEYDTGKRR KIRSSKIEFG GPNLFQDFAS
901: KKTKVKKARL ERSSSANQPF RIL

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.