Factsheet for Solyc08g005080.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400046008	Potato	cytosol	80.21	73.26
Solyc09g015580.1.1	Tomato	vacuole	40.41	63.02
Solyc09g015600.1.1	Tomato	extracellular	38.97	60.58
Solyc10g047480.1.1	Tomato	nucleus	58.76	59.38
Solyc09g017990.1.1	Tomato	plastid	56.08	57.02
Solyc08g021830.1.1	Tomato	cytosol	41.03	56.86
Solyc02g005600.1.1	Tomato	vacuole	55.26	54.92
Solyc08g048410.1.1	Tomato	cytosol	18.76	54.49
Solyc08g023360.1.1	Tomato	extracellular	27.63	52.76
Solyc08g021790.1.1	Tomato	extracellular, vacuole	25.15	52.14
Solyc09g017980.1.1	Tomato	extracellular	21.86	51.21
Solyc08g048310.1.1	Tomato	extracellular, vacuole	21.24	47.69
Solyc09g015610.1.1	Tomato	cytosol	12.16	46.83
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	26.19	36.08
Solyc08g076910.2.1	Tomato	nucleus	44.54	30.25
VIT_02s0012g01340.t01	Wine grape	nucleus	30.52	28.19
CDX76553	Canola	cytosol	34.23	25.86
Bra021031.1-P	Field mustard	nucleus	34.23	25.86
KRH39541	Soybean	nucleus	39.38	25.85
CDX87681	Canola	nucleus	32.58	25.08
KRH74417	Soybean	nucleus	37.32	25.03
Zm00001d051513_P001	Maize	nucleus	30.31	24.87
Solyc07g007640.1.1	Tomato	cytosol	11.96	24.47
Solyc01g105240.2.1	Tomato	nucleus	18.35	24.32
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	29.07	24.06
CDY37145	Canola	cytosol	32.78	23.87
Bra022060.1-P	Field mustard	nucleus	32.37	23.61
AT4G17895.1	Thale cress	nucleus	33.4	23.31
Solyc04g056290.2.1	Tomato	nucleus	17.53	23.04
CDY58499	Canola	endoplasmic reticulum	32.78	22.05
Bra025000.1-P	Field mustard	endoplasmic reticulum	32.99	21.95
CDX77686	Canola	endoplasmic reticulum	32.99	21.19
OQU85579	Sorghum	nucleus	32.37	21.07
Zm00001d017686_P002	Maize	mitochondrion, nucleus	31.34	20.54
AT5G46740.1	Thale cress	nucleus, plastid	30.93	20.49
HORVU6Hr1G067180.4	Barley	nucleus	30.72	20.16
TraesCS6A01G264800.1	Wheat	nucleus	30.31	20.03
TraesCS6D01G250100.1	Wheat	nucleus	30.31	19.89
TraesCS6B01G291800.1	Wheat	nucleus	30.1	19.76
Solyc08g068810.2.1	Tomato	cytosol	18.97	16.76
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	23.09	16.33
Solyc01g068240.2.1	Tomato	cytosol	17.73	16.14
Solyc11g065210.1.1	Tomato	cytosol	17.53	15.92
Solyc12g096430.1.1	Tomato	nucleus, plastid	20.41	15.92
Solyc07g005530.2.1	Tomato	nucleus	27.22	14.3
Solyc08g069050.2.1	Tomato	extracellular	20.41	12.74
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	21.03	10.56
Solyc04g076210.2.1	Tomato	nucleus	22.27	9.83

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4CI00	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	EnsemblPlantsGene:Solyc08g005080.1	EnsemblPlants:Solyc08g005080.1.1	UniParc:UPI000276B68A	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:57008..59954

Molecular Weight (calculated)

55673.7 Da

IEP (calculated)

4.361

GRAVY (calculated)

-0.328

Length

485 amino acids

Sequence
(BLAST)

001: MKKVNLENVQ TSPDHDALKS QEIEKNNIDL SLVKIEVEEK NSDLNEYRSP VRVDSDSMGC IVSSDGNELL YSGWAEWSPS IVAPITSIKP ENFKETVEET
101: RSIENKPSKM VGIGLSNLGN TCFLNAVLQC IMHTVVLLQL LASIDHISPC NNHTIGFCVL CMIRNLVDLS IVGAYDYVSP RKIVSHLRDF SPDFDLYQQE
201: DAHEFLQCFL NKLEYCCSNL EPQDNIVEES FGGRFVSKLR CCNCEYFSVT QEPFIDISLD IEDIDSVPEA LNSFTKIEKF EFSCEMCEIH GSFEKQLLVD
301: RAPSVAALHL KRFKNNGTDI QKVEKHVSFP LELDMLLYTN EINNEEMKYD LYAIIVHSGP SISSGHYYSF IRCAPNEWYK FNDKQVDFVE EDFVLAQEAY
401: IIFYAKRDTL WFSDYTQIYR SFINLVIPST SNDHLLDVDD QVYCEDQLQD VEIKKVCSKD EEESMDVNEK KRKLEDSPSK DVKAD

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.