Factsheet for Solyc01g068240.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11380_001	Banana	cytosol	47.84	68.36
CDX72275	Canola	cytosol	44.09	63.51
PGSC0003DMT400033182	Potato	cytosol	16.51	62.41
PGSC0003DMT400033184	Potato	cytosol	21.01	61.2
Bra024037.1-P	Field mustard	cytosol	44.09	58.75
PGSC0003DMT400033175	Potato	mitochondrion	18.01	57.48
GSMUA_Achr8P09770_001	Banana	cytosol	46.15	57.48
KRH23933	Soybean	cytosol	57.22	56.38
KRH39864	Soybean	cytosol	55.91	56.02
VIT_13s0019g01690.t01	Wine grape	cytosol	56.85	54.79
OQU81355	Sorghum	cytosol, nucleus, plastid	7.88	53.85
CDY23262	Canola	nucleus	53.28	51.92
Solyc11g065210.1.1	Tomato	cytosol	51.22	51.12
Bra010268.1-P	Field mustard	cytosol	53.28	49.91
AT4G30890.2	Thale cress	cytosol	51.59	49.91
Zm00001d022414_P001	Maize	cytosol	50.47	48.73
Os07t0661300-01	Rice	cytosol, plasma membrane	44.47	48.47
CDY36465	Canola	cytosol	53.28	48.38
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	52.72	47.63
CDY28224	Canola	endoplasmic reticulum, vacuole	52.72	47.63
CDX68701	Canola	endoplasmic reticulum, extracellular	52.35	46.73
PGSC0003DMT400033173	Potato	mitochondrion	30.96	46.48
TraesCS2A01G127200.3	Wheat	cytosol	48.97	34.89
TraesCS2D01G129600.2	Wheat	cytosol	48.78	33.72
HORVU2Hr1G022340.2	Barley	cytosol	47.84	33.6
TraesCS2B01G149000.2	Wheat	cytosol	48.03	33.2
Solyc04g056290.2.1	Tomato	nucleus	17.26	24.93
Solyc08g048410.1.1	Tomato	cytosol	7.69	24.55
Solyc01g105240.2.1	Tomato	nucleus	16.51	24.04
Zm00001d007096_P007	Maize	mitochondrion	49.16	22.15
Solyc07g007640.1.1	Tomato	cytosol	9.01	20.25
Solyc09g015600.1.1	Tomato	extracellular	11.63	19.87
Solyc09g015580.1.1	Tomato	vacuole	11.26	19.29
Solyc08g048310.1.1	Tomato	extracellular, vacuole	7.32	18.06
Solyc09g017980.1.1	Tomato	extracellular	6.94	17.87
Solyc08g005080.1.1	Tomato	cytosol	16.14	17.73
Solyc09g017990.1.1	Tomato	plastid	14.63	16.35
Solyc02g005600.1.1	Tomato	vacuole	14.82	16.19
Solyc08g023360.1.1	Tomato	extracellular	7.69	16.14
Solyc08g068810.2.1	Tomato	cytosol	16.51	16.03
Solyc12g096430.1.1	Tomato	nucleus, plastid	18.57	15.92
Solyc10g047480.1.1	Tomato	nucleus	14.26	15.83
Solyc08g021790.1.1	Tomato	extracellular, vacuole	6.94	15.81
Solyc08g021830.1.1	Tomato	cytosol	10.32	15.71
Solyc09g015610.1.1	Tomato	cytosol	3.56	15.08
Solyc08g069050.2.1	Tomato	extracellular	19.89	13.64
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	17.26	13.41
Solyc08g076910.2.1	Tomato	nucleus	16.51	12.32
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	20.45	11.28
Solyc07g005530.2.1	Tomato	nucleus	19.51	11.27
Solyc04g076210.2.1	Tomato	nucleus	18.76	9.1

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	MEROPS:C19.A14	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	UniProt:K4AX71	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR44747	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc01g068240.2
EnsemblPlants:Solyc01g068240.2.1	UniParc:UPI0002763386	InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:

Description

No Description!

Coordinates

chr1:+:77353621..77363661

Molecular Weight (calculated)

57892.4 Da

IEP (calculated)

6.616

GRAVY (calculated)

-0.301

Length

533 amino acids

Sequence
(BLAST)

001: MSDSKIFLFG SFTEDETKSL LNQPSGCDGN KHVEEKVPVN SSESEPGFSF GSFGAVSNSQ PASSKERVGS DSSTTLKEEK AGADNLLREI NQNGDVHNDY
101: YINGHEESAM AHNIDLSNLC VLEDEAKAIN KLSRTTGRDD DALLSKGKLN GTTSNSAKIL HSEEALPEVS SGPLDVAGLL PRGLINPGNL CFLNATLQAL
201: LSCSPFVELL LKLRILSISK AEYPTLAAFV GFLSQFVVPS PTSSMKKDAT SVEVGTPFSP AMFDAVLKKF TPDVPKSISG RPRQEDAQEF LSFVMDQMHG
301: ELLKLEGQSC SSGKNSSVVS SEDDEEWETV GPKNKSAVTR TQDFVPSNLS AIFGGQLKSL VKARGNKASA TVQPFLVVHL DISHEAVHNI QDALRLFSAP
401: ETLEGYRTAA GKVGVSTARK SISIQTLPKM MILHLKRFGY GSYGSTKLLK PVHFPLELVI SRDLLASSTT EGRQYQLVST ITHHGREASK GHYTADCRHQ
501: SGKWLRFDDA SVTAVTTNRV LHDQAYVLFY KQV

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.