Factsheet for Solyc11g065210.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400034298	Potato	cytosol	95.51	95.51
GSMUA_Achr1P11380_001	Banana	cytosol	48.5	69.44
GSMUA_Achr8P09770_001	Banana	cytosol	46.63	58.18
Solyc01g068240.2.1	Tomato	cytosol	51.12	51.22
Os07t0661300-01	Rice	cytosol, plasma membrane	44.76	48.88
Zm00001d022414_P001	Maize	cytosol	49.81	48.19
TraesCS2A01G127200.3	Wheat	cytosol	48.69	34.76
HORVU2Hr1G022340.2	Barley	cytosol	48.69	34.26
TraesCS2D01G129600.2	Wheat	cytosol	48.13	33.33
TraesCS2B01G149000.2	Wheat	cytosol	47.94	33.2
Solyc04g056290.2.1	Tomato	nucleus	17.98	26.02
Solyc01g105240.2.1	Tomato	nucleus	17.42	25.41
Solyc08g048410.1.1	Tomato	cytosol	7.49	23.95
Zm00001d007096_P007	Maize	mitochondrion	48.88	22.06
Solyc09g015600.1.1	Tomato	extracellular	11.8	20.19
Solyc09g015580.1.1	Tomato	vacuole	11.05	18.97
Solyc09g017980.1.1	Tomato	extracellular	7.3	18.84
Solyc07g007640.1.1	Tomato	cytosol	7.87	17.72
Solyc08g005080.1.1	Tomato	cytosol	15.92	17.53
Solyc08g048310.1.1	Tomato	extracellular, vacuole	6.93	17.13
Solyc10g047480.1.1	Tomato	nucleus	15.17	16.88
Solyc09g017990.1.1	Tomato	plastid	14.23	15.93
Solyc12g096430.1.1	Tomato	nucleus, plastid	18.54	15.92
Solyc08g023360.1.1	Tomato	extracellular	7.3	15.35
Solyc08g068810.2.1	Tomato	cytosol	15.54	15.12
Solyc02g005600.1.1	Tomato	vacuole	13.67	14.96
Solyc08g021790.1.1	Tomato	extracellular, vacuole	6.55	14.96
Solyc08g021830.1.1	Tomato	cytosol	9.74	14.86
Solyc09g015610.1.1	Tomato	cytosol	3.18	13.49
Solyc08g069050.2.1	Tomato	extracellular	18.54	12.74
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	16.1	12.54
Solyc08g076910.2.1	Tomato	nucleus	16.29	12.18
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	20.41	11.28
Solyc07g005530.2.1	Tomato	nucleus	19.48	11.27
Solyc04g076210.2.1	Tomato	nucleus	19.48	9.46

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	MEROPS:C19.A14	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:K4D9D4	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	EnsemblPlantsGene:Solyc11g065210.1	EnsemblPlants:Solyc11g065210.1.1	UniParc:UPI0002769819	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr11:+:50559492..50566219

Molecular Weight (calculated)

59037.9 Da

IEP (calculated)

6.680

GRAVY (calculated)

-0.303

Length

534 amino acids

Sequence
(BLAST)

001: MNDQKVLIFG SFTEDEIRTL QSQPTTDVGI TFGSLDSATL KSVGIFDTKL TEFDHSKKLQ PSELAHRENV TEGHSNTRKT IKSVGNTVKE HGSSSFTNPA
101: YNRSVLHPTV NAGSAYDSSE KSSLLQCPAD NVSELSSSVQ DVHLTNQLKN YNLVNGRHTS LNASSNGCAV VFRSLLPRGL VNLGNLCFLN ATLQALLSCS
201: PFVHLLQELK TRDITEAGYP TLHAFVQFIS DFGIYIDSSM KKKETIVSEI GLPFRPLMFE SVLKNFTPDV ANSLTGRPRQ EDVQEFLSFL MHQMHDELLK
301: LEGQVPDGIG RNSSLVSSTD DEEEDDDWET VGPRNRTAVT RTQSFVPSSL SKIFGGQLKS VVKAKGNKAS ATVQPFLLLH LNIYPEPICS IEDALRMFSA
401: PEALEGYRTS AAGKAEIVSA SKSVKILELS DIMVLHLMRF SYGSEGSTKL HKPVHFPLEL VFGRELLDSP TEGRKYELVA TITHHGRDPS KGHYTADARH
501: PSGKWLRYDD VSVTAIPTSK VLHDQAYVLF YKQL

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.