Factsheet for Solyc08g021830.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
peroxisome 1
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	peroxisome
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g021790.1.1	Tomato	extracellular, vacuole	50.29	75.21
Solyc08g023360.1.1	Tomato	extracellular	50.0	68.9
Solyc09g015600.1.1	Tomato	extracellular	40.29	45.19
Solyc09g017980.1.1	Tomato	extracellular	26.29	44.44
Solyc09g015580.1.1	Tomato	vacuole	38.86	43.73
Solyc08g005080.1.1	Tomato	cytosol	56.86	41.03
Solyc10g047480.1.1	Tomato	nucleus	54.57	39.79
Solyc02g005600.1.1	Tomato	vacuole	55.43	39.75
Solyc09g017990.1.1	Tomato	plastid	53.43	39.2
Solyc08g048310.1.1	Tomato	extracellular, vacuole	23.71	38.43
Solyc08g048410.1.1	Tomato	cytosol	18.29	38.32
Solyc09g015610.1.1	Tomato	cytosol	11.71	32.54
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	24.86	24.72
VIT_02s0012g01340.t01	Wine grape	nucleus	32.0	21.33
Solyc08g076910.2.1	Tomato	nucleus	43.43	21.29
CDX76553	Canola	cytosol	34.0	18.54
Bra021031.1-P	Field mustard	nucleus	34.0	18.54
KRH39541	Soybean	nucleus	38.29	18.13
CDX87681	Canola	nucleus	32.29	17.94
KRH74417	Soybean	nucleus	36.57	17.7
AT4G17895.1	Thale cress	nucleus	34.0	17.12
CDY37145	Canola	cytosol	32.57	17.12
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	28.57	17.06
Bra022060.1-P	Field mustard	nucleus	31.71	16.69
Zm00001d051513_P001	Maize	nucleus	27.71	16.41
Solyc07g007640.1.1	Tomato	cytosol	10.57	15.61
CDY58499	Canola	endoplasmic reticulum	32.0	15.53
Bra025000.1-P	Field mustard	endoplasmic reticulum	32.29	15.5
CDX77686	Canola	endoplasmic reticulum	33.14	15.36
Solyc01g105240.2.1	Tomato	nucleus	16.0	15.3
AT5G46740.1	Thale cress	nucleus, plastid	31.43	15.03
Solyc04g056290.2.1	Tomato	nucleus	15.14	14.36
TraesCS6A01G264800.1	Wheat	nucleus	29.43	14.03
TraesCS6B01G291800.1	Wheat	nucleus	29.14	13.8
TraesCS6D01G250100.1	Wheat	nucleus	29.14	13.8
OQU85579	Sorghum	nucleus	29.14	13.69
HORVU6Hr1G067180.4	Barley	nucleus	28.29	13.4
Zm00001d017686_P002	Maize	mitochondrion, nucleus	27.71	13.11
Solyc08g068810.2.1	Tomato	cytosol	18.29	11.66
Solyc12g096430.1.1	Tomato	nucleus, plastid	18.86	10.61
Solyc01g068240.2.1	Tomato	cytosol	15.71	10.32
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	19.71	10.06
Solyc11g065210.1.1	Tomato	cytosol	14.86	9.74
Solyc07g005530.2.1	Tomato	nucleus	23.43	8.88
Solyc08g069050.2.1	Tomato	extracellular	19.71	8.88
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	20.57	7.45
Solyc04g076210.2.1	Tomato	nucleus	20.0	6.37

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:K4CJK3	PFAM:PF00443	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	EnsemblPlantsGene:Solyc08g021830.1	EnsemblPlants:Solyc08g021830.1.1	UniParc:UPI000276BA78
InterPro:USP_dom	:	:	:	:	:

Description

No Description!

Coordinates

chr8:+:34459130..34462451

Molecular Weight (calculated)

40244.3 Da

IEP (calculated)

5.875

GRAVY (calculated)

-0.176

Length

350 amino acids

Sequence
(BLAST)

001: MLGFFFSIKK VNANNVQTSP DHEAPKIKEI EKYNVDFSSV KIEVDEKTKE KDSVLDERSL VQGSGMCNLG NTCLVNAVVQ SFMHTIVLLQ LLGSIDHISP
101: CDSKFSPDFS WYQQEDAHEF LQFFLNKLEL LQFRATSLWR RHLLRCCNYC HLSITQEPLI DISLEIQDVD SVPAAPESFT KIEKIEYSCE RCKTHGPFEK
201: ELLVDRAPFV AALHFKIFKN NGVVVHKVDK HVSFPLELDK LLYTSKINNV VFVEEDFVLA KEVYILFYAN RGTPWFLDYI KIHRPFIKLV VPTSPCIPNN
301: YAFVVGESNN GDEETSMKHE HNKTEGIVIP VDVKIKLSCS RDEEFMEAHM

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.