Factsheet for Solyc09g017980.1.1

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g048410.1.1	Tomato	cytosol	33.82	41.92
Solyc09g015610.1.1	Tomato	cytosol	24.15	39.68
Solyc08g048310.1.1	Tomato	extracellular, vacuole	39.61	37.96
Solyc09g015600.1.1	Tomato	extracellular	56.52	37.5
Solyc09g015580.1.1	Tomato	vacuole	51.21	34.08
Solyc09g017990.1.1	Tomato	plastid	68.12	29.56
PGSC0003DMT400093591	Potato	cytosol	32.37	26.69
Solyc08g021830.1.1	Tomato	cytosol	44.44	26.29
Solyc08g021790.1.1	Tomato	extracellular, vacuole	28.5	25.21
Solyc08g023360.1.1	Tomato	extracellular	29.95	24.41
Solyc02g005600.1.1	Tomato	vacuole	56.04	23.77
Solyc08g005080.1.1	Tomato	cytosol	51.21	21.86
Solyc10g047480.1.1	Tomato	nucleus	49.76	21.46
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	32.37	19.03
VIT_02s0012g01340.t01	Wine grape	nucleus	38.16	15.05
Solyc07g007640.1.1	Tomato	cytosol	15.94	13.92
Solyc08g076910.2.1	Tomato	nucleus	43.96	12.75
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	33.33	11.77
CDX87681	Canola	nucleus	35.27	11.59
CDY37145	Canola	cytosol	36.23	11.26
Bra022060.1-P	Field mustard	nucleus	35.75	11.13
Solyc01g105240.2.1	Tomato	nucleus	19.32	10.93
CDX76553	Canola	cytosol	33.33	10.75
Bra021031.1-P	Field mustard	nucleus	33.33	10.75
Solyc04g056290.2.1	Tomato	nucleus	18.84	10.57
Zm00001d051513_P001	Maize	nucleus	29.95	10.49
AT4G17895.1	Thale cress	nucleus	34.3	10.22
Bra025000.1-P	Field mustard	endoplasmic reticulum	35.27	10.01
KRH39541	Soybean	nucleus	35.75	10.01
CDY58499	Canola	endoplasmic reticulum	34.78	9.99
KRH74417	Soybean	nucleus	34.3	9.82
CDX77686	Canola	endoplasmic reticulum	35.27	9.67
AT5G46740.1	Thale cress	nucleus, plastid	31.4	8.88
OQU85579	Sorghum	nucleus	30.43	8.46
Solyc08g068810.2.1	Tomato	cytosol	21.74	8.2
TraesCS6A01G264800.1	Wheat	nucleus	28.99	8.17
TraesCS6B01G291800.1	Wheat	nucleus	28.99	8.12
TraesCS6D01G250100.1	Wheat	nucleus	28.99	8.12
HORVU6Hr1G067180.4	Barley	nucleus	28.99	8.12
Zm00001d017686_P002	Maize	mitochondrion, nucleus	28.5	7.97
Solyc11g065210.1.1	Tomato	cytosol	18.84	7.3
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	23.19	7.0
Solyc01g068240.2.1	Tomato	cytosol	17.87	6.94
Solyc12g096430.1.1	Tomato	nucleus, plastid	20.29	6.75
Solyc08g069050.2.1	Tomato	extracellular	21.26	5.66
Solyc07g005530.2.1	Tomato	nucleus	25.12	5.63
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	22.22	4.76
Solyc04g076210.2.1	Tomato	nucleus	21.74	4.09

Protein Annotations

EnsemblPlants:Solyc09g017980.1.1	EnsemblPlantsGene:Solyc09g017980.1	Gene3D:3.90.70.10	InterPro:IPR028889	InterPro:Papain_like_cys_pep_sf	InterPro:USP_dom
PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	PFscan:PS50235	SEG:seg	SignalP:SignalP-noTM	SUPFAM:SSF54001
UniParc:UPI000276BF34	UniProt:K4CS66	MapMan:35.1	:	:	:

Description

No Description!

Coordinates

chr9:-:12233000..12234828

Molecular Weight (calculated)

23628.3 Da

IEP (calculated)

7.717

GRAVY (calculated)

0.244

Length

207 amino acids

Sequence
(BLAST)

001: MLKPLSLVLV QMQLAMLLLQ IEVCSHIVTE INNTKENIVK KAFGGCLVSK LRCCNCGYSS IKRKPLIDLS FEIEDVDSVS AAMGSFTKIE KIEFSCERCR
101: TQGPFEKQLL VDHSPNDVVL LLKRFKYNGL VVQKVEKHVS FSLELDMLLY SNDINNVDYV QEDLVLASKH IFYFIQRGVI HCFQIISKAT YPSYVLLTPQ
201: LQMVLMI

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.