Factsheet for GSMUA_Achr4P19070_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi, plastid, cytosol

Predictor Summary:

plastid 3
plasma membrane 1
cytosol 1
nucleus 1
mitochondrion 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	67.33	40.44
Solyc08g048410.1.1	Tomato	cytosol	16.19	34.13
PGSC0003DMT400093121	Potato	cytosol	27.84	33.91
Solyc09g017980.1.1	Tomato	extracellular	19.03	32.37
Solyc09g015600.1.1	Tomato	extracellular	28.12	31.73
Solyc09g015610.1.1	Tomato	cytosol	10.8	30.16
Solyc09g015580.1.1	Tomato	vacuole	25.85	29.26
Zm00001d051513_P001	Maize	nucleus	46.88	27.92
Solyc08g048310.1.1	Tomato	extracellular, vacuole	16.19	26.39
PGSC0003DMT400093591	Potato	cytosol	18.75	26.29
Solyc10g047480.1.1	Tomato	nucleus	35.8	26.25
Solyc08g005080.1.1	Tomato	cytosol	36.08	26.19
VIT_02s0012g01340.t01	Wine grape	nucleus	38.35	25.71
Solyc09g017990.1.1	Tomato	plastid	33.81	24.95
Solyc08g021830.1.1	Tomato	cytosol	24.72	24.86
GSMUA_Achr1P11380_001	Banana	cytosol	25.85	24.4
GSMUA_Achr10P...	Banana	cytosol	23.58	24.06
Solyc02g005600.1.1	Tomato	vacuole	33.24	23.98
PGSC0003DMT400046008	Potato	cytosol	35.8	23.73
GSMUA_Achr7P19160_001	Banana	mitochondrion	20.45	23.61
TraesCS6D01G250100.1	Wheat	nucleus	48.3	23.0
HORVU6Hr1G067180.4	Barley	nucleus	48.3	23.0
TraesCS6A01G264800.1	Wheat	nucleus	47.73	22.89
TraesCS6B01G291800.1	Wheat	nucleus	48.01	22.87
CDX87681	Canola	nucleus	40.91	22.86
Solyc08g021790.1.1	Tomato	extracellular, vacuole	15.06	22.65
CDX76553	Canola	cytosol	41.19	22.59
Bra021031.1-P	Field mustard	nucleus	41.19	22.59
GSMUA_Achr7P05330_001	Banana	cytosol	20.45	22.57
GSMUA_Achr8P14390_001	Banana	cytosol	23.3	22.4
OQU85579	Sorghum	nucleus	47.16	22.28
GSMUA_Achr7P05090_001	Banana	vacuole	29.55	22.27
PGSC0003DMT400045160	Potato	nucleus	44.6	22.05
Solyc08g023360.1.1	Tomato	extracellular	15.91	22.05
Solyc08g076910.2.1	Tomato	nucleus	44.6	21.99
Zm00001d017686_P002	Maize	mitochondrion, nucleus	45.74	21.76
GSMUA_Achr3P04660_001	Banana	nucleus	36.93	21.67
Bra022060.1-P	Field mustard	nucleus	40.62	21.5
CDY37145	Canola	cytosol	40.62	21.47
PGSC0003DMT400089939	Potato	cytosol	22.73	21.39
GSMUA_Achr10P...	Banana	nucleus	22.73	21.39
GSMUA_Achr8P09770_001	Banana	cytosol	25.57	21.03
KRH74417	Soybean	nucleus	42.33	20.61
KRH39541	Soybean	nucleus	43.18	20.57
Bra025000.1-P	Field mustard	endoplasmic reticulum	42.33	20.44
CDY58499	Canola	endoplasmic reticulum	41.48	20.25
AT4G17895.1	Thale cress	nucleus	38.64	19.57
AT5G46740.1	Thale cress	nucleus, plastid	40.62	19.54
CDX77686	Canola	endoplasmic reticulum	41.76	19.47
GSMUA_Achr7P19170_001	Banana	cytosol	6.82	17.91
GSMUA_Achr7P17050_001	Banana	plastid	23.58	15.9
GSMUA_Achr9P10330_001	Banana	mitochondrion	27.84	15.73
GSMUA_Achr7P19010_001	Banana	nucleus	18.47	14.13
GSMUA_Achr10P...	Banana	nucleus	16.19	14.04
PGSC0003DMT400088084	Potato	cytosol	13.35	13.99
GSMUA_Achr4P01920_001	Banana	nucleus	36.08	13.15
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	29.26	12.29
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	28.41	11.78
GSMUA_Achr10P...	Banana	golgi	14.49	11.33
GSMUA_Achr5P22990_001	Banana	vacuole	28.69	11.23
GSMUA_Achr2P20080_001	Banana	plasma membrane	29.83	11.16
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	28.12	10.69
GSMUA_AchrUn_...	Banana	golgi, vacuole	27.84	9.67
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	10.51	9.59
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	29.55	9.2

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr4G19070_001	EnsemblPlants:GSMUA_Achr4P19070_001	EnsemblPlants:GSMUA_Achr4T19070_001	InterPro:IPR028889
UniProt:M0SQ70	PFAM:PF00443	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000295F00A	InterPro:USP_CS	InterPro:USP_dom

Description

Putative Ubiquitin carboxyl-terminal hydrolase 21 [Source:GMGC_GENE;Acc:GSMUA_Achr4G19070_001]

Coordinates

chr4:-:20134775..20137812

Molecular Weight (calculated)

39628.8 Da

IEP (calculated)

6.935

GRAVY (calculated)

-0.072

Length

352 amino acids

Sequence
(BLAST)

001: MTYEPGVVVR IPLPSSYRLR CDRLLRKGSI LDVILTRIRL PRLVPSQGAA LFNLGNTCFL NAVLQCLTHT VPLVQKIRRM DHPCSCCDIG GFCSFCALKG
101: HINRSLFLSG YVISPTDFAK NLNKISPHFQ LGQQEDAHEF LHSLLDNLHT CCLGHCTTDQ PSSLDEDSLV KHVFGGRLRS QLRCCNCGHC SDTFEPLLDL
201: SLEIDDVDNI VDALASFTRS EKIDDPDINF TCEGCKAQVS LEKQLKLDHT PQVLTLHLKR FKNNGVFAYK LRNPVEYPLE LDLTPCLSCP VDEVHSKYDL
301: YAVLLHIGSL EFGHYFCCIR SSPSTWHCIN DSKANSDKIS FFLLLNFHGR EA

Best Arabidopsis Sequence Match ( AT5G46740.1 )
(BLAST)

001: MAEFSDPPPS NLSSSHKLTK PNQTLDESSP TAPIRDLVTN SLSLSSPIRQ IQALSPAKPD GSSSSPPDKT LNFNPEENRD VNPDESSSSP SDKTLIAPPA
101: QISPVSNNNH LRITNTSDSY LYRPPRRYIE YESDDDELNK MEPTKPLQLS WWYPRIEPTG VGAGLYNSGN TCFIASVLQC FTHTVPLIDS LRSFMYGNPC
201: NCGNEKFCVM QALRDHIELA LRSSGYGINI DRFRDNLTYF SSDFMINHQE DAHEFLQSFL DKLERCCLDP KNQLGSVSSQ DLNIVDNVFG GGLMSTLCCC
301: NCNSVSNTFE PSLGWSLEIE DVNTLWKALE SFTCVEKLED QLTCDNCKEK VTKEKQLRFD KLPPVATFHL KRFTNDGVTM EKIFDHIEFP LELDLSPFMS
401: SNHDPEVSTR YHLYAFVEHI GIRATFGHYS SYVRSAPETW HNFDDSKVTR ISEERVLSRP AYILFYAREG TPWFSSTFEQ LKTVFEATPL HFSPVSVLDN
501: SYESVDNSSK ACNDSVGVSI PDVKWPDSCC QEPKEEVFHS AESSNNEDSS AMIDALGSPQ SEKPFAETSQ QTEPESCPTE NKAYIDKSEK PFAETSQPKE
601: PKPFADRASI DAPLLKVQNQ DISPKRKAGE RATLGGPKLK YQKPNSHQKR QGTFQIQRAH LQTKKQEESR KTKRPLFRSN VAASAPDPKY KNHALSYLNR
701: AQTPRARKLA NALSDSPTKK KKSSNMRRSI KL

Arabidopsis Description

UBP21Ubiquitin carboxyl-terminal hydrolase 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIQ1]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.