Factsheet for PGSC0003DMT400093121

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400089939	Potato	cytosol	64.36	49.73
Solyc10g047480.1.1	Tomato	nucleus	80.28	48.33
PGSC0003DMT400046008	Potato	cytosol	75.78	41.24
PGSC0003DMT400093591	Potato	cytosol	35.64	41.04
PGSC0003DMT400088084	Potato	cytosol	39.45	33.93
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	33.91	27.84
VIT_02s0012g01340.t01	Wine grape	nucleus	39.45	21.71
PGSC0003DMT400045160	Potato	nucleus	52.25	21.21
PGSC0003DMT400096420	Potato	mitochondrion	9.69	18.79
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	35.99	17.75
PGSC0003DMT400032703	Potato	nucleus	22.15	17.49
CDX87681	Canola	nucleus	38.06	17.46
PGSC0003DMT400086994	Potato	cytosol	7.96	17.29
CDX76553	Canola	cytosol	38.41	17.29
Bra021031.1-P	Field mustard	nucleus	38.41	17.29
CDY37145	Canola	cytosol	38.06	16.52
Bra022060.1-P	Field mustard	nucleus	37.37	16.24
PGSC0003DMT400033175	Potato	mitochondrion	9.34	16.17
Zm00001d051513_P001	Maize	nucleus	32.87	16.07
KRH39541	Soybean	nucleus	40.83	15.97
KRH74417	Soybean	nucleus	39.1	15.63
PGSC0003DMT400033182	Potato	cytosol	7.61	15.6
CDY58499	Canola	endoplasmic reticulum	38.06	15.26
AT4G17895.1	Thale cress	nucleus	36.68	15.25
Bra025000.1-P	Field mustard	endoplasmic reticulum	38.41	15.23
CDX77686	Canola	endoplasmic reticulum	37.72	14.44
PGSC0003DMT400038315	Potato	nucleus	22.15	14.29
AT5G46740.1	Thale cress	nucleus, plastid	35.99	14.21
PGSC0003DMT400033184	Potato	cytosol	9.0	14.21
TraesCS6A01G264800.1	Wheat	nucleus	35.99	14.17
HORVU6Hr1G067180.4	Barley	nucleus	35.99	14.07
TraesCS6D01G250100.1	Wheat	nucleus	35.99	14.07
OQU85579	Sorghum	nucleus	35.99	13.96
TraesCS6B01G291800.1	Wheat	nucleus	35.64	13.94
Zm00001d017686_P002	Maize	mitochondrion, nucleus	33.56	13.11
PGSC0003DMT400071055	Potato	mitochondrion	26.64	12.46
PGSC0003DMT400033173	Potato	mitochondrion	13.49	10.99
PGSC0003DMT400034298	Potato	cytosol	19.03	10.3
PGSC0003DMT400028924	Potato	nucleus	30.1	9.4
PGSC0003DMT400076065	Potato	endoplasmic reticulum	10.38	8.62
PGSC0003DMT400063184	Potato	plastid	0.0	0.0

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1DRA8	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400042692
PGSC:PGSC0003DMG400042692	EnsemblPlants:PGSC0003DMT400093121	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000296018D	InterPro:USP_CS	InterPro:USP_dom
SEG:seg	:	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400042692]

Coordinates

chr7:-:15708000..15710882

Molecular Weight (calculated)

33572.7 Da

IEP (calculated)

4.791

GRAVY (calculated)

-0.409

Length

289 amino acids

Sequence
(BLAST)

001: MEKETADNLQ NSPDREALKT EEIIKNNVDF SLVKIKVEKI SKERDSGVDE WSPVRVEPDS LIISVESNSE SMRYTVSSNS IFSPTFRPNQ QEDAHEFLQC
101: FLNKLESCCY NLEPQDNIVK EAFGGRLVSM LRCCNCCHLS VTHEPLIDLS LEIVDVDSVP EALESFTKIE KIEFSCEMCK TQGPFEKQFL IDRAHSVATL
201: CLKRFKNDRF VVQEVDKHVS FPLELDMLHY TNKINNEEMK YDLYAVIVHS GFSFSSGHYY SFIRCNPNKW YKFNDEQVHW VHQDLVLVE

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.