Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 4
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400071055 | Potato | mitochondrion | 100.0 | 36.08 |
| PGSC0003DMT400096420 | Potato | mitochondrion | 1.79 | 2.68 |
| PGSC0003DMT400028924 | Potato | nucleus | 8.97 | 2.16 |
| PGSC0003DMT400088084 | Potato | cytosol | 3.14 | 2.08 |
| PGSC0003DMT400046008 | Potato | cytosol | 3.59 | 1.51 |
| PGSC0003DMT400045160 | Potato | nucleus | 4.48 | 1.4 |
| PGSC0003DMT400086994 | Potato | cytosol | 0.45 | 0.75 |
| PGSC0003DMT400089939 | Potato | cytosol | 0.9 | 0.53 |
| PGSC0003DMT400093591 | Potato | cytosol | 0.45 | 0.4 |
| PGSC0003DMT400032703 | Potato | nucleus | 0.45 | 0.27 |
| PGSC0003DMT400038315 | Potato | nucleus | 0.45 | 0.22 |
| PGSC0003DMT400034298 | Potato | cytosol | 0.45 | 0.19 |
| PGSC0003DMT400033184 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400033182 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400033175 | Potato | mitochondrion | 0.0 | 0.0 |
| PGSC0003DMT400076065 | Potato | endoplasmic reticulum | 0.0 | 0.0 |
| PGSC0003DMT400033173 | Potato | mitochondrion | 0.0 | 0.0 |
| PGSC0003DMT400093121 | Potato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400063184 | EnsemblPlantsGene:PGSC0003DMG400024576 | PANTHER:PTHR45511 | PGSC:PGSC0003DMG400024576 | SEG:seg | UniParc:UPI000296B037 |
| UniProt:M1CA77 | MapMan:35.2 | : | : | : | : |
Description
Gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400024576]
Coordinates
chr3:-:53599687..53600358
Molecular Weight (calculated)
23801.8 Da
IEP (calculated)
9.925
GRAVY (calculated)
-0.673
Length
223 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSKVSKVHS SPVRELGIFE RSSFKRPTSG NIKMVFHSKE SGNRTGDVRA SVLTEKEITS LPDRNGVSKS CGNGQMTRSH ALTNGNGNEK LPIVATSPVA
101: DGPLKDYGGS NGKAAGKDSY HKEVTRSSSL ANGNGKIQSV ATDTSRGSLH RNNGENSESL AAITSAYRDT SNGHVESSSI SGSKRKLSDQ CILLEYDAQS
201: RAKVEELKKE YATLSLITCI PLP
101: DGPLKDYGGS NGKAAGKDSY HKEVTRSSSL ANGNGKIQSV ATDTSRGSLH RNNGENSESL AAITSAYRDT SNGHVESSSI SGSKRKLSDQ CILLEYDAQS
201: RAKVEELKKE YATLSLITCI PLP
001: MADEATRAAF MEIQASMIEL TGKLKQVQNQ MRNKEGDRKR AFLTLEELRP LPEETNTYKS IGRTFVLEPK TVLEGEQEQK LKDSEAAVAS LQTSKEYLEK
101: QVAEVENNLR ELLQQEPGIA QQIMSMSM
101: QVAEVENNLR ELLQQEPGIA QQIMSMSM
Arabidopsis Description
PFD1At2g07350/T13E11.12 [Source:UniProtKB/TrEMBL;Acc:Q94AF7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.