Factsheet for PGSC0003DMT400046008

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc08g005080.1.1	Tomato	cytosol	73.26	80.21
PGSC0003DMT400093121	Potato	cytosol	41.24	75.78
PGSC0003DMT400089939	Potato	cytosol	50.85	72.19
PGSC0003DMT400088084	Potato	cytosol	40.49	63.99
PGSC0003DMT400093591	Potato	cytosol	21.09	44.62
PGSC0003DMT400096420	Potato	mitochondrion	11.3	40.27
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	23.73	35.8
PGSC0003DMT400045160	Potato	nucleus	46.89	34.97
VIT_02s0012g01340.t01	Wine grape	nucleus	31.64	32.0
CDX76553	Canola	cytosol	33.15	27.41
Bra021031.1-P	Field mustard	nucleus	33.15	27.41
KRH39541	Soybean	nucleus	37.48	26.93
KRH74417	Soybean	nucleus	35.97	26.42
AT4G17895.1	Thale cress	nucleus	33.52	25.61
Zm00001d051513_P001	Maize	nucleus	28.44	25.55
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	27.68	25.09
CDX87681	Canola	nucleus	29.19	24.6
CDY37145	Canola	cytosol	29.76	23.72
Bra022060.1-P	Field mustard	nucleus	29.19	23.31
PGSC0003DMT400032703	Potato	nucleus	15.82	22.95
CDY58499	Canola	endoplasmic reticulum	29.94	22.05
Bra025000.1-P	Field mustard	endoplasmic reticulum	30.13	21.95
OQU85579	Sorghum	nucleus	30.51	21.75
AT5G46740.1	Thale cress	nucleus, plastid	29.94	21.72
CDX77686	Canola	endoplasmic reticulum	30.13	21.19
HORVU6Hr1G067180.4	Barley	nucleus	29.38	21.11
PGSC0003DMT400033175	Potato	mitochondrion	6.59	20.96
TraesCS6A01G264800.1	Wheat	nucleus	28.81	20.84
TraesCS6D01G250100.1	Wheat	nucleus	28.81	20.7
Zm00001d017686_P002	Maize	mitochondrion, nucleus	28.63	20.54
TraesCS6B01G291800.1	Wheat	nucleus	28.44	20.43
PGSC0003DMT400086994	Potato	cytosol	5.08	20.3
PGSC0003DMT400038315	Potato	nucleus	16.95	20.09
PGSC0003DMT400033182	Potato	cytosol	4.9	18.44
PGSC0003DMT400071055	Potato	mitochondrion	20.34	17.48
PGSC0003DMT400033184	Potato	cytosol	5.27	15.3
PGSC0003DMT400034298	Potato	cytosol	14.31	14.23
PGSC0003DMT400028924	Potato	nucleus	24.48	14.04
PGSC0003DMT400033173	Potato	mitochondrion	9.23	13.8
PGSC0003DMT400076065	Potato	endoplasmic reticulum	8.85	13.51
PGSC0003DMT400063184	Potato	plastid	1.51	3.59

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	UniProt:M1BII9	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400017850
PGSC:PGSC0003DMG400017850	EnsemblPlants:PGSC0003DMT400046008	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033
PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000296E7A4	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400017850]

Coordinates

chr8:-:4238773..4245478

Molecular Weight (calculated)

60849.7 Da

IEP (calculated)

4.594

GRAVY (calculated)

-0.351

Length

531 amino acids

Sequence
(BLAST)

001: MKKINTENGQ TSLDHDALKS QEIGKNNVDF SLVKIEVEEE SKEKDSGLNE WSPIRVESNS LIISVDSDSM GYIVSSDSNE LSYSGWAEWS PLTVVPISSI
101: EPKNFKETAE ETRPIENKPS KMVGLGMCNL GNTCFLNAVV QSFMHTVVFL ELLASIDHVS PCDNHTVGFC VVCMIRDLVD LSMAGAFDYV SPKKIVSHLR
201: DFSPDFDWYQ QEDAHEFLQC FLNKLEYCCY NLEPQDNIVK EAFGGRFVSK LRCCNCDHFS VTHEPLIDIS LEIEDIDNVP AALESFTKIE KIEFYCEKCK
301: TQGPFEKQLI VDRAPSVVAL HLKRFKNNII VVQKVDKHVS FPLELDMLLY TNKINNEEMK YDLYAIIVHS GPSISSGHYY SFIRCAPNEW YKFNDEQVVF
401: VEEDFVLAQE AYIVFYARRG TPWFSDYIQI HRAFVNLIIP TTSPCIPNNH AFDVGEFNNV ADETNMKHEL NKIEQDDFPD QEYSKDQLQD VKIKHVCSRD
501: EEFMDALHGG SHVSFVNEKK RKLEDSPSRD D

Best Arabidopsis Sequence Match ( AT4G17895.1 )
(BLAST)

001: MLMAKPDVPS SILPRSSSIL PNSIETLDEN ESIEAQVNNV QSLALSSPNR DRSDDDDNNN NHDSVSIPPP IYDGYSSSSS DESQSVPSPP INLDHDDDEC
101: QIPIRNTSQA LDDIDDDIWG DDDLPETRRP WTPNVSPGFG SDDDDDNDDD NSKNEPRKSL FYGFRQEPEP VTGVGAGLWN LGNSCFLNSV FQCFTHTVPL
201: IESLLSFRYE VPCHCGNEFF CVIRAIRYHI EAALRPERCP IAPYFFFDNL NYFSPDFQRY QQEDAHEFLQ AFLEKLEICG SDRTSFRGDI TSQDVFSGRL
301: ISGLRCCNCD YVSETYEKSV GLSLEIEDVD TLGSALESFT RVEKLDEQLT CDNCNEKVSK EKQLLLDKLP LVATFHLKRF KNNGLYMEKI YKHVKIPLEI
401: DLQPYMRNIQ ENEVSTKYHL YALVEHFGYS VAYGHYSSYV RSAPKIWHHF DDSKVTRIDE DMVLSQDSYI LFYAREGTRW FSSVYEEMQP LVEASLLNSS
501: PKSVLDSSTN GECLSEISYE NGDKASKPCD SAGVCNQHVK TKEDFVSLSN DDVFLSAESS SGEESPMGEL LDPLDPDDSY SPCTEKESDS CLAIERATIR
601: DDFFPLLLDQ NQESSTSSPK LQERTFEMQL LQMEETTKSQ EPWKQPLSSI SNIADSMEAE FVYGDLMKKP SPRARELLDQ AISTNGSPPK KLKTT

Arabidopsis Description

UBP20Ubiquitin carboxyl-terminal hydrolase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.