Factsheet for PGSC0003DMT400086994

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038315	Potato	nucleus	80.45	23.88
Solyc08g068810.2.1	Tomato	cytosol	81.95	19.85
GSMUA_Achr7P05330_001	Banana	cytosol	42.11	17.55
VIT_04s0008g06860.t01	Wine grape	nucleus	69.17	16.64
PGSC0003DMT400096420	Potato	mitochondrion	16.54	14.77
KRH15753	Soybean	nucleus	60.15	14.44
KRH05289	Soybean	nucleus	60.15	14.41
Bra028566.1-P	Field mustard	cytosol	53.38	14.09
AT5G10790.1	Thale cress	cytosol	53.38	12.75
CDX85744	Canola	cytosol	53.38	12.2
CDY40119	Canola	nucleus	53.38	12.16
PGSC0003DMT400088084	Potato	cytosol	23.31	9.23
PGSC0003DMT400093591	Potato	cytosol	16.54	8.76
PGSC0003DMT400093121	Potato	cytosol	17.29	7.96
PGSC0003DMT400089939	Potato	cytosol	21.8	7.75
PGSC0003DMT400032703	Potato	nucleus	16.54	6.01
PGSC0003DMT400046008	Potato	cytosol	20.3	5.08
PGSC0003DMT400033184	Potato	cytosol	6.77	4.92
PGSC0003DMT400045160	Potato	nucleus	23.31	4.35
PGSC0003DMT400033182	Potato	cytosol	4.51	4.26
PGSC0003DMT400071055	Potato	mitochondrion	18.05	3.88
PGSC0003DMT400034298	Potato	cytosol	15.04	3.75
PGSC0003DMT400033175	Potato	mitochondrion	3.76	2.99
PGSC0003DMT400033173	Potato	mitochondrion	7.52	2.82
PGSC0003DMT400028924	Potato	nucleus	19.55	2.81
PGSC0003DMT400063184	Potato	plastid	0.75	0.45
PGSC0003DMT400076065	Potato	endoplasmic reticulum	0.0	0.0

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:M1DCY4	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400036565	PGSC:PGSC0003DMG400036565	EnsemblPlants:PGSC0003DMT400086994
PFscan:PS50235	PANTHER:PTHR43961	PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
UniParc:UPI000295B1A2	InterPro:USP_dom	:	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400036565]

Coordinates

chr8:-:34107720..34108121

Molecular Weight (calculated)

15710.9 Da

IEP (calculated)

7.094

GRAVY (calculated)

-0.154

Length

133 amino acids

Sequence
(BLAST)

001: MSKKIDRHVQ FLFSFDMKPY ISSSIVRKRH GNIIFSFYGD ESDVYTEFEI FAVITHSGML ESGHYVTYMR LRNQWYKCDD AWITEVDEEV VKASHCYLMY
101: YVQKMLYHKR CGDVSCQPMS LRADIFVPIV GCS

Best Arabidopsis Sequence Match ( AT5G10790.2 )
(BLAST)

001: MSVKSGADVV AVRSNKKRRL DSQLIIGSNF LVSPRDRREK WTFPLGLRGL NNLGSTCFMN AVLQALVHAP PLRNFWLSGQ HNRDLCPRRT MGLLCLPCDL
101: DVIFSAMFSG DRTPYSPAHL LYSWWQHSTN LATYEQQDSH EFFISLLDRI HENEGKSKCL YQDNEECQCI THKAFSGLLR SDVTCTTCGS TSTTYDPFID
201: ISLTLDSMNG FSPADCRKNR YSGGPSVNAI MPTLSGCLDF FTRSEKLGPD QKLNCQSCGE KRESSKQMSI RRLPLLLCLH VKRFEHSLTR KTSRKIDSYL
301: QYPFRLNMSP YLSSSIIGKR FGNRIFAFDG EGEYDSSSSS SPSAEFEIFA VVTHKGMLES GHYVTYLRLK GLWYRCDDAW INEVEEEVVR GCECYMLFYA
401: QETVIQKAHK ELSYQVISMA DAFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.