Factsheet for PGSC0003DMT400033173

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 2
mitochondrion 5
cytosol 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033182	Potato	cytosol	25.92	65.25
PGSC0003DMT400033184	Potato	cytosol	33.24	64.48
PGSC0003DMT400033175	Potato	mitochondrion	21.13	44.91
OQU81355	Sorghum	cytosol, nucleus, plastid	7.89	35.9
GSMUA_Achr1P11380_001	Banana	cytosol	35.21	33.51
CDX72275	Canola	cytosol	33.8	32.43
Solyc01g068240.2.1	Tomato	cytosol	46.48	30.96
Bra024037.1-P	Field mustard	cytosol	33.52	29.75
GSMUA_Achr8P09770_001	Banana	cytosol	35.21	29.21
KRH39864	Soybean	cytosol	37.46	25.0
KRH23933	Soybean	cytosol	37.18	24.4
Os07t0661300-01	Rice	cytosol, plasma membrane	33.52	24.34
PGSC0003DMT400034298	Potato	cytosol	35.77	23.78
VIT_13s0019g01690.t01	Wine grape	cytosol	36.62	23.51
CDY23262	Canola	nucleus	35.49	23.03
Zm00001d022414_P001	Maize	cytosol	34.65	22.28
AT4G30890.2	Thale cress	cytosol	34.08	21.96
Bra010268.1-P	Field mustard	cytosol	34.93	21.79
CDY28224	Canola	endoplasmic reticulum, vacuole	36.06	21.69
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	36.06	21.69
CDX68701	Canola	endoplasmic reticulum, extracellular	35.77	21.27
CDY36465	Canola	cytosol	34.93	21.12
TraesCS2A01G127200.3	Wheat	cytosol	36.34	17.25
HORVU2Hr1G022340.2	Barley	cytosol	35.77	16.73
TraesCS2D01G129600.2	Wheat	cytosol	35.77	16.47
TraesCS2B01G149000.2	Wheat	cytosol	35.77	16.47
PGSC0003DMT400032703	Potato	nucleus	14.65	14.21
PGSC0003DMT400093121	Potato	cytosol	10.99	13.49
PGSC0003DMT400093591	Potato	cytosol	7.89	11.16
Zm00001d007096_P007	Maize	mitochondrion	34.65	10.4
PGSC0003DMT400089939	Potato	cytosol	10.42	9.89
PGSC0003DMT400038315	Potato	nucleus	12.39	9.82
PGSC0003DMT400046008	Potato	cytosol	13.8	9.23
PGSC0003DMT400088084	Potato	cytosol	7.89	8.33
PGSC0003DMT400071055	Potato	mitochondrion	14.08	8.09
PGSC0003DMT400076065	Potato	endoplasmic reticulum	7.61	7.76
PGSC0003DMT400086994	Potato	cytosol	2.82	7.52
PGSC0003DMT400045160	Potato	nucleus	13.8	6.88
PGSC0003DMT400028924	Potato	nucleus	14.65	5.62
PGSC0003DMT400096420	Potato	mitochondrion	1.69	4.03
PGSC0003DMT400063184	Potato	plastid	0.0	0.0

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:2.60.120.330	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPNS-like	InterPro:IPR027443	UniProt:M1AYQ0	PFAM:PF00443	EnsemblPlantsGene:PGSC0003DMG400012740
PGSC:PGSC0003DMG400012740	EnsemblPlants:PGSC0003DMT400033173	PANTHER:PTHR44747	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF51197
SUPFAM:SSF54001	UniParc:UPI000294E58E	SEG:seg	:	:	:

Description

Ubiquitin carboxyl-terminal hydrolase [Source:PGSC_GENE;Acc:PGSC0003DMG400012740]

Coordinates

chr10:+:17164609..17171454

Molecular Weight (calculated)

39557.6 Da

IEP (calculated)

9.947

GRAVY (calculated)

-0.241

Length

355 amino acids

Sequence
(BLAST)

001: MTFLKGLVGS RVLSTLQATQ PPTNPPIIDR GPKVDGALAT DAFFLPLLGP VITGTEHDIL TKFLKLKSFV FHGSESEDAY EFILDFYEKL HKPRTSRDNS
101: EREGASVLGG FKLGFEVGSS GKNSSVISSE DDEEWKTVSP KNKSVVMRTQ DFVPSNLSVI IGGRGGGELK SLVKVRVNKA SAIVQSFLVF HPDISHEAVH
201: NILDAHRLFF SPRTLERYRT TIGMVGVATA RKSISIQTLP KMMILHLKRF GYGSYGSTKL HKPVHFPLEL VISREIVHEE NAQVYAFWTS IASTTKPLQA
301: LSNDRYKSFL HKPVVNNKTP RKSLPFFPCP DKDKVVSPPA ELVDYNNPRL YPDFT

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.