CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033184	Potato	cytosol	34.62	14.75
PGSC0003DMT400033182	Potato	cytosol	20.51	11.35
CDX72275	Canola	cytosol	51.28	10.81
Bra024037.1-P	Field mustard	cytosol	50.0	9.75
CDY23262	Canola	nucleus	57.69	8.23
VIT_13s0019g01690.t01	Wine grape	cytosol	57.69	8.14
KRH39864	Soybean	cytosol	55.13	8.08
PGSC0003DMT400033173	Potato	mitochondrion	35.9	7.89
Solyc01g068240.2.1	Tomato	cytosol	53.85	7.88
AT4G30890.2	Thale cress	cytosol	55.13	7.8
KRH23933	Soybean	cytosol	53.85	7.76
Bra010268.1-P	Field mustard	cytosol	55.13	7.56
CDY36465	Canola	cytosol	55.13	7.33
CDY28224	Canola	endoplasmic reticulum, vacuole	53.85	7.12
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	53.85	7.12
CDX68701	Canola	endoplasmic reticulum, extracellular	53.85	7.04
OQU90420	Sorghum	mitochondrion	62.82	6.65
PGSC0003DMT400033175	Potato	mitochondrion	8.97	4.19
EES07024	Sorghum	mitochondrion	12.82	2.39
EES12269	Sorghum	cytosol	8.97	1.9
EER92723	Sorghum	nucleus	7.69	1.64
OQU85579	Sorghum	nucleus	15.38	1.61
EER89337	Sorghum	nucleus	17.95	1.53
KXG22316	Sorghum	plastid	12.82	1.48
EES12962	Sorghum	plastid	10.26	1.42
OQU92076	Sorghum	nucleus	15.38	1.39
KXG20513	Sorghum	golgi, plasma membrane	16.67	1.33
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	14.1	1.14
OQU80649	Sorghum	nucleus	11.54	1.12
OQU89635	Sorghum	vacuole	12.82	1.1

Protein Annotations

EnsemblPlants:OQU81355	EnsemblPlantsGene:SORBI_3006G046100	PANTHER:PTHR44747	ProteinID:OQU81355	ProteinID:OQU81355.1	UniParc:UPI000B8B96E1
UniProt:A0A1Z5RD30	MapMan:35.2	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:-:32225391..32226244

Molecular Weight (calculated)

8456.2 Da

IEP (calculated)

10.786

GRAVY (calculated)

-0.403

Length

78 amino acids

Sequence
(BLAST)

1: MFVKCKNKKS LGRSLLSNSK EGMVVSSADD DPWETVGRKK KKSAITGTRS FVPSDLSAIF GGQLQSVVKA ADLHRRCA

Best Arabidopsis Sequence Match ( AT4G30890.1 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.