CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
golgi 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003476_P002	Maize	cytosol	99.46	99.46
Zm00001d025570_P003	Maize	nucleus	98.91	98.91
Os04t0452400-01	Rice	nucleus	97.28	97.55
TraesCS2A01G340100.1	Wheat	cytosol	95.92	95.41
GSMUA_Achr10P...	Banana	cytosol	85.33	91.01
VIT_07s0141g00230.t01	Wine grape	nucleus	86.96	86.72
KRG97572	Soybean	nucleus	86.41	86.18
GSMUA_Achr8P14390_001	Banana	cytosol	85.6	86.07
KRH31299	Soybean	nucleus	86.14	85.91
KRH59329	Soybean	nucleus	86.14	85.91
KRH43175	Soybean	nucleus	85.87	85.64
PGSC0003DMT400032703	Potato	nucleus	85.05	85.52
HORVU2Hr1G079230.7	Barley	mitochondrion	96.2	85.51
Solyc04g056290.2.1	Tomato	nucleus	84.78	84.55
GSMUA_Achr7P19160_001	Banana	mitochondrion	68.75	82.95
GSMUA_Achr10P...	Banana	nucleus	82.61	81.28
EER92723	Sorghum	nucleus	79.89	80.33
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	74.46	76.54
EES07024	Sorghum	mitochondrion	76.36	67.06
EES12962	Sorghum	plastid	27.45	17.88
KXG22316	Sorghum	plastid	25.0	13.59
OQU80649	Sorghum	nucleus	27.72	12.66
OQU85579	Sorghum	nucleus	25.27	12.48
OQU90420	Sorghum	mitochondrion	24.73	12.35
EER89337	Sorghum	nucleus	27.45	11.01
OQU89635	Sorghum	vacuole	26.36	10.64
OQU92076	Sorghum	nucleus	24.18	10.28
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	26.9	10.25
KXG20513	Sorghum	golgi, plasma membrane	26.63	10.04
OQU81355	Sorghum	cytosol, nucleus, plastid	1.9	8.97

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EntrezGene:8057450	UniProt:C5Y9P6	EnsemblPlants:EES12269	ProteinID:EES12269
ProteinID:EES12269.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	EnsemblPlantsGene:SORBI_3006G101700	SUPFAM:SSF54001
unigene:Sbi.8172	UniParc:UPI0001A872AA	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_002447941.1	:

Description

hypothetical protein

Coordinates

chr6:-:47208305..47215658

Molecular Weight (calculated)

41857.8 Da

IEP (calculated)

6.373

GRAVY (calculated)

-0.408

Length

368 amino acids

Sequence
(BLAST)

001: MVMGASGSKL EKALGDQFPE GERYFGLENF GNTCYCNSVL QALYFCIPFR EQLLEYYANN KTPGDAEENL LTCLADLFMQ ISQAKKKTGV IAPKRFVQRV
101: KKQNELFRSY MHQDAHEFLN FLLNELVDIL EKESSAAKDS PQLSSPEKAP NGPVQPLANG VKKEPPVTLV HKNFQGILTN ETRCLRCETV TARDETFLDL
201: SVDIEQNSSI TSCLKNFCST ETLNAEDKFF CDKCCSLQEA QKRMKIKKAP HILVIHLKRF KYIEQLGRYK KLSYRVVFPM ELKLSNTSDD VDTEYSLFAV
301: VVHVGSGPNH GHYVSLVKSH NHWLFFDDEN VEMVEEQTLQ TFFGSSHEYS GNTDHGYILF YEGLGGKS

Best Arabidopsis Sequence Match ( AT2G22310.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCAPFREQ LLEHYANNKA DAEENLLTCL ADLFSQISSQ KKKTGVIAPK RFVQRLKKQN
101: ELFRSYMHQD AHEFLNYLLN ELVEILEKET QATKADNETS SSPEKIANVL KAPLANGVHK EPIVTWVHKI FQGILTNETR CLRCETVTAR DETFLDLSLD
201: IEQNSSITSC LKNFSSTETL HAEDKFFCDK CCSLQEAQKR MKIKKPPHIL VIHLKRFKYM EQLGRYKKLS YRVVFPLELK LSNTVDEYVD IEYSLFAVVV
301: HVGSGPNHGH YVSLVKSHNH WLFFDDESVE IIEESAVQTF FGSSQEYSSN TDHGYILLYE SLGTR

Arabidopsis Description

UBP4UBP4 [Source:UniProtKB/TrEMBL;Acc:A0A178W1M0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.