CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
golgi 1
mitochondrion 5
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d016918_P001	Maize	plastid	93.79	94.24
GSMUA_Achr10P...	Banana	cytosol	65.39	79.42
HORVU6Hr1G050090.1	Barley	nucleus, plastid	76.61	78.68
TraesCS6D01G187000.1	Wheat	nucleus, plastid	76.13	78.19
TraesCS6A01G203500.1	Wheat	nucleus, plastid	76.13	78.19
EES12269	Sorghum	cytosol	67.06	76.36
GSMUA_Achr8P14390_001	Banana	cytosol	66.59	76.23
VIT_07s0141g00230.t01	Wine grape	nucleus	67.06	76.15
KRG97572	Soybean	nucleus	66.83	75.88
KRH31299	Soybean	nucleus	66.59	75.61
KRH43175	Soybean	nucleus	66.35	75.34
KRH59329	Soybean	nucleus	66.11	75.07
PGSC0003DMT400032703	Potato	nucleus	65.39	74.86
Solyc04g056290.2.1	Tomato	nucleus	65.87	74.8
TraesCS6B01G223900.1	Wheat	plastid	74.46	74.46
Os02t0573400-01	Rice	nucleus	72.31	73.01
GSMUA_Achr7P19160_001	Banana	mitochondrion	52.51	72.13
EER92723	Sorghum	nucleus	62.53	71.58
GSMUA_Achr10P...	Banana	nucleus	63.48	71.12
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	59.43	69.55
EES12962	Sorghum	plastid	24.58	18.23
KXG22316	Sorghum	plastid	22.43	13.88
OQU85579	Sorghum	nucleus	23.39	13.15
OQU81355	Sorghum	cytosol, nucleus, plastid	2.39	12.82
OQU90420	Sorghum	mitochondrion	21.96	12.48
OQU80649	Sorghum	nucleus	22.43	11.66
EER89337	Sorghum	nucleus	24.58	11.23
OQU92076	Sorghum	nucleus	23.15	11.2
OQU89635	Sorghum	vacuole	22.2	10.2
KXG20513	Sorghum	golgi, plasma membrane	23.15	9.94
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	22.43	9.73

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EntrezGene:8072619	UniProt:C5XVN1	EnsemblPlants:EES07024	ProteinID:EES07024
ProteinID:EES07024.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR43942	PANTHER:PTHR43942:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	EnsemblPlantsGene:SORBI_3004G188600	SUPFAM:SSF54001
unigene:Sbi.16767	UniParc:UPI0001A85CF0	InterPro:USP_CS	InterPro:USP_dom	RefSeq:XP_002454048.1	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:54059815..54064542

Molecular Weight (calculated)

47154.4 Da

IEP (calculated)

6.028

GRAVY (calculated)

-0.442

Length

419 amino acids

Sequence
(BLAST)

001: MAKLARSPTA SPPAAAADRH RSAAGSGLRS LASAASGWFD RWAVMGSGLS KLERAFGDQF PEGERYFGLE NFGNTCYCNS VLQALYYCAP FREQLLEYYS
101: KNRNLEDAEE NLLTCLADLF SQISASKKKT GVIAPKRFIQ MVRKLNEYFR GYMHQDAHEF LNFLLNEIVD ILEKESSSAK DSPGTTSPEK VSNGATVDEV
201: RKEPLVTWVH KSFQGTLTNE TRCLMCETIT AKDETFFDLS VDIEQNSSLT SCLKNFFSTE TLNADDKFFC DKCCSLQEAE KRMKIKKVPQ TLVIHLKRFK
301: FIEQLNRNKK LSYRVVYPLE LKLSSSSSDA VADCEYSLFA VVVHLGSGPN QGHYVAKIKS HDHWLSFDDD NVEMIPESTL QTFYGSSREY SGNTDHGYIL
401: FYERIGGNGD EKTDSSDGV

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.