CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97572	Soybean	nucleus	98.37	98.37
KRH43175	Soybean	nucleus	95.39	95.39
KRH59329	Soybean	nucleus	95.12	95.12
VIT_07s0141g00230.t01	Wine grape	nucleus	91.33	91.33
GSMUA_Achr10P...	Banana	cytosol	84.82	90.72
AT2G22310.1	Thale cress	nucleus	88.62	89.59
PGSC0003DMT400032703	Potato	nucleus	88.62	89.34
CDY13770	Canola	nucleus	85.64	88.76
AT4G39910.1	Thale cress	nucleus	89.16	88.68
CDY68864	Canola	nucleus	89.16	88.44
Bra010647.1-P	Field mustard	nucleus	89.16	88.44
CDX69375	Canola	nucleus	88.89	88.41
Solyc01g105240.2.1	Tomato	nucleus	87.53	88.25
Bra038533.1-P	Field mustard	nucleus	84.82	88.17
CDX76934	Canola	nucleus	84.01	87.57
Zm00001d003476_P002	Maize	cytosol	85.91	86.14
EES12269	Sorghum	cytosol	85.91	86.14
Os04t0452400-01	Rice	nucleus	85.64	86.1
GSMUA_Achr8P14390_001	Banana	cytosol	85.09	85.79
Zm00001d025570_P003	Maize	nucleus	85.37	85.6
TraesCS2A01G340100.1	Wheat	cytosol	85.37	85.14
Os03t0190800-01	Rice	cytosol	84.28	84.97
GSMUA_Achr7P19160_001	Banana	mitochondrion	70.19	84.92
Zm00001d028005_P001	Maize	nucleus	84.01	84.7
TraesCS4B01G306100.1	Wheat	cytosol	83.74	84.43
TraesCS4D01G304300.1	Wheat	cytosol	83.47	84.15
TraesCS4A01G406600.1	Wheat	cytosol	83.47	84.15
HORVU4Hr1G078590.1	Barley	cytosol	83.47	84.15
EER92723	Sorghum	nucleus	83.47	84.15
TraesCS7D01G125700.1	Wheat	nucleus	83.2	83.88
CDY63898	Canola	nucleus	88.62	82.16
HORVU2Hr1G079230.7	Barley	mitochondrion	85.37	76.09
Bra011823.1-P	Field mustard	nucleus	88.08	73.7
CDY68683	Canola	endoplasmic reticulum, vacuole	89.16	67.56
TraesCS6A01G203500.1	Wheat	nucleus, plastid	73.98	66.91
Zm00001d016918_P001	Maize	plastid	75.61	66.91
TraesCS6D01G187000.1	Wheat	nucleus, plastid	73.71	66.67
EES07024	Sorghum	mitochondrion	75.61	66.59
HORVU6Hr1G050090.1	Barley	nucleus, plastid	73.44	66.42
Os02t0573400-01	Rice	nucleus	71.82	63.86
TraesCS6B01G223900.1	Wheat	plastid	72.36	63.72
KRH72298	Soybean	cytosol, plastid	26.56	19.29
KRH39864	Soybean	cytosol	25.75	17.86
KRH23933	Soybean	cytosol	25.75	17.56
KRH03615	Soybean	cytosol	27.37	17.06
KRH20191	Soybean	plastid	26.83	16.67
KRH15753	Soybean	nucleus	24.39	16.25
KRH05289	Soybean	nucleus	24.39	16.22
KRH43852	Soybean	nucleus	25.75	14.82
KRH13611	Soybean	nucleus	25.75	14.57
KRH52289	Soybean	golgi	26.83	13.49
KRH61621	Soybean	golgi	26.83	13.34
KRH15706	Soybean	golgi, plasma membrane, vacuole	25.75	13.03
KRH05330	Soybean	golgi, plasma membrane	26.02	13.03
KRH74417	Soybean	nucleus	25.2	12.86
KRH39541	Soybean	nucleus	24.39	12.18
KRH03060	Soybean	nucleus	27.37	11.18
KRH52893	Soybean	extracellular, golgi, vacuole	25.75	10.7
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	28.46	10.62
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	28.46	10.61
KRH74502	Soybean	golgi, plasma membrane, vacuole	26.56	10.57
KRH69660	Soybean	golgi	26.83	10.55
KRH16837	Soybean	golgi	26.83	9.47
KRH72452	Soybean	golgi, plasma membrane	26.56	9.46
KRH62182	Soybean	golgi, vacuole	27.64	8.96

Protein Annotations

EntrezGene:100787737	MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EMBL:ACUP02007137	MEROPS:C19.008	EnsemblPlantsGene:GLYMA_11G240500
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
UniProt:I1LNK3	InterPro:IPR028889	EnsemblPlants:KRH31299	ProteinID:KRH31299	ProteinID:KRH31299.1	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942	PANTHER:PTHR43942:SF2	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000233C3D5	InterPro:USP_CS	InterPro:USP_dom	:

Description

hypothetical protein

Coordinates

chr11:-:33482556..33489916

Molecular Weight (calculated)

42054.6 Da

IEP (calculated)

6.292

GRAVY (calculated)

-0.475

Length

369 amino acids

Sequence
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGLENFGN TCYCNSVLQA LYFCVPFREQ LLEYYANNKS IADAEENLLT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNFL LNELVDILEK EAQSAKNDQE TSPPSEKAAN GPKNGLANGA KKEPLVTWVH KNFQGILTNE TRCLRCETVT ARDETFFDLS
201: LDIEQNSSIT SCLKNFSSTE TLNAEDKFFC DKCCSLQEAQ KRMKIKKPPH ILVIHLKRFK YIEQLGRYKK LSYRVVFPLE LKLSDTAENS DIEYSLFAVV
301: VHVGSGPNHG HYVSLVKSHN HWLFFDDENV EMIDESAVQT FFGSSQEYSS NTDHGYILFY ESIGSGNRN

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.