Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY68864 | Canola | nucleus | 98.11 | 97.85 |
| AT4G39910.1 | Thale cress | nucleus | 97.57 | 97.57 |
| CDY63898 | Canola | nucleus | 99.46 | 92.71 |
| CDY13770 | Canola | nucleus | 86.52 | 90.17 |
| CDX76934 | Canola | nucleus | 85.98 | 90.11 |
| KRH59329 | Soybean | nucleus | 89.49 | 89.97 |
| KRH43175 | Soybean | nucleus | 89.22 | 89.7 |
| VIT_07s0141g00230.t01 | Wine grape | nucleus | 89.22 | 89.7 |
| KRH31299 | Soybean | nucleus | 88.41 | 88.89 |
| GSMUA_Achr10P... | Banana | cytosol | 82.48 | 88.7 |
| KRG97572 | Soybean | nucleus | 88.14 | 88.62 |
| PGSC0003DMT400032703 | Potato | nucleus | 85.98 | 87.16 |
| GSMUA_Achr8P14390_001 | Banana | cytosol | 82.48 | 83.61 |
| GSMUA_Achr7P19160_001 | Banana | mitochondrion | 68.46 | 83.28 |
| Bra011823.1-P | Field mustard | nucleus | 98.92 | 83.22 |
| HORVU4Hr1G078590.1 | Barley | cytosol | 81.4 | 82.51 |
| TraesCS4A01G406600.1 | Wheat | cytosol | 81.13 | 82.24 |
| Os03t0190800-01 | Rice | cytosol | 81.13 | 82.24 |
| TraesCS4B01G306100.1 | Wheat | cytosol | 81.13 | 82.24 |
| Zm00001d028005_P001 | Maize | nucleus | 80.86 | 81.97 |
| TraesCS4D01G304300.1 | Wheat | cytosol | 80.86 | 81.97 |
| TraesCS7D01G125700.1 | Wheat | nucleus | 80.59 | 81.69 |
| GSMUA_Achr10P... | Banana | nucleus | 81.67 | 81.02 |
| EER92723 | Sorghum | nucleus | 79.78 | 80.87 |
| VIT_09s0070g00500.t01 | Wine grape | golgi, mitochondrion, nucleus, peroxisome | 76.01 | 78.77 |
| CDY68683 | Canola | endoplasmic reticulum, vacuole | 98.11 | 74.74 |
| CDY50263 | Canola | cytosol | 43.13 | 59.04 |
| CDX72275 | Canola | cytosol | 23.72 | 23.78 |
| CDY23262 | Canola | nucleus | 24.53 | 16.64 |
| CDY36465 | Canola | cytosol | 25.07 | 15.84 |
| CDY28224 | Canola | endoplasmic reticulum, vacuole | 25.07 | 15.76 |
| CDX87681 | Canola | nucleus | 26.42 | 15.56 |
| CDX75188 | Canola | vacuole | 25.61 | 15.55 |
| CDX68773 | Canola | nucleus, plasma membrane | 25.61 | 15.47 |
| CDX68701 | Canola | endoplasmic reticulum, extracellular | 24.8 | 15.41 |
| CDX76553 | Canola | cytosol | 26.42 | 15.26 |
| CDX85744 | Canola | cytosol | 23.45 | 14.95 |
| CDX75770 | Canola | mitochondrion, nucleus | 26.68 | 14.91 |
| CDY40119 | Canola | nucleus | 23.45 | 14.9 |
| CDY37145 | Canola | cytosol | 26.15 | 14.56 |
| CDY45587 | Canola | endoplasmic reticulum, vacuole | 24.8 | 14.53 |
| CDY20330 | Canola | vacuole | 24.8 | 14.31 |
| CDX76801 | Canola | endoplasmic reticulum, golgi, vacuole | 25.07 | 14.29 |
| CDY58499 | Canola | endoplasmic reticulum | 27.76 | 14.29 |
| CDY34761 | Canola | endoplasmic reticulum, vacuole | 24.8 | 14.29 |
| CDX98449 | Canola | mitochondrion | 26.42 | 13.92 |
| CDX97571 | Canola | mitochondrion | 26.15 | 13.7 |
| CDY08792 | Canola | vacuole | 27.22 | 13.48 |
| CDY14564 | Canola | golgi | 27.22 | 13.25 |
| CDX77686 | Canola | endoplasmic reticulum | 26.95 | 13.24 |
| CDX96790 | Canola | nucleus | 26.42 | 11.74 |
| CDY11838 | Canola | nucleus, plastid | 25.61 | 11.6 |
| CDX83925 | Canola | nucleus | 26.42 | 11.57 |
| CDY48465 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.95 | 11.42 |
| CDX88651 | Canola | nucleus, plastid | 25.34 | 11.41 |
| CDY32735 | Canola | nucleus | 24.53 | 11.36 |
| CDY65125 | Canola | endoplasmic reticulum, plasma membrane, vacuole | 26.68 | 11.29 |
| CDY02782 | Canola | nucleus | 24.26 | 11.24 |
| CDY57464 | Canola | nucleus | 25.61 | 11.2 |
| CDY55010 | Canola | nucleus | 25.61 | 11.18 |
| CDY11021 | Canola | golgi | 25.34 | 9.32 |
| CDY03441 | Canola | golgi | 25.34 | 9.28 |
| CDX92643 | Canola | golgi | 25.34 | 9.28 |
| CDY34291 | Canola | golgi | 25.34 | 9.22 |
| CDX87682 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| MapMan:19.2.3.1.1.2 | Gene3D:3.90.70.10 | GO:A0A078BX37 | EnsemblPlants:CDX69375 | ProteinID:CDX69375 | ProteinID:CDX69375.1 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006464 | GO:GO:0006511 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016579 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0036459 |
| EnsemblPlantsGene:GSBRNA2T00131230001 | InterPro:IPR028889 | PFAM:PF00443 | ScanProsite:PS00972 | ScanProsite:PS00973 | PFscan:PS50235 |
| PANTHER:PTHR43942 | PANTHER:PTHR43942:SF5 | InterPro:Papain_like_cys_pep_sf | InterPro:Peptidase_C19_UCH | SUPFAM:SSF54001 | UniParc:UPI0004EF1D4C |
| InterPro:USP_CS | InterPro:USP_dom | SEG:seg | : | : | : |
Description
BnaC01g00780D
Coordinates
chrLK031789:+:4440112..4442637
Molecular Weight (calculated)
42427.3 Da
IEP (calculated)
6.742
GRAVY (calculated)
-0.426
Length
371 amino acids
Sequence
(BLAST)
(BLAST)
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHK TSSSSSSPEK IANGPKAPLA NGVHKEPVVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHSEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYMEQLGR YKKLSYRVVF PLELKLSNTV EPYTDVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHK TSSSSSSPEK IANGPKAPLA NGVHKEPVVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHSEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYMEQLGR YKKLSYRVVF PLELKLSNTV EPYTDVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K
Arabidopsis Description
UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.