CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 6
vacuole 6
plasma membrane 6
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	94.86	94.75
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	93.84	93.73
CDX83925	Canola	nucleus	81.96	84.77
CDX96790	Canola	nucleus	80.25	84.19
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	85.73	80.93
VIT_19s0140g00200.t01	Wine grape	plasma membrane	53.88	47.34
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	52.63	46.61
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	52.51	46.46
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	50.8	46.07
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	43.84	45.82
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	43.84	41.47
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	44.98	40.79
TraesCS6D01G179700.1	Wheat	plasma membrane	45.09	40.43
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	44.75	40.41
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	44.98	40.41
GSMUA_Achr2P20080_001	Banana	plasma membrane	43.38	40.38
TraesCS6A01G192600.1	Wheat	plasma membrane	44.86	40.1
TraesCS6B01G231700.4	Wheat	plasma membrane	44.98	40.04
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	45.21	39.36
CDY34761	Canola	endoplasmic reticulum, vacuole	26.6	36.18
CDY45587	Canola	endoplasmic reticulum, vacuole	26.03	36.02
CDX75188	Canola	vacuole	25.11	36.01
CDY20330	Canola	vacuole	26.37	35.93
CDX68773	Canola	nucleus, plasma membrane	24.77	35.34
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	26.14	35.18
CDY08792	Canola	vacuole	26.37	30.84
CDY14564	Canola	golgi	26.6	30.58
CDY13770	Canola	nucleus	11.19	27.53
CDX69375	Canola	nucleus	11.42	26.95
CDY68864	Canola	nucleus	11.42	26.88
CDX76934	Canola	nucleus	10.84	26.84
CDY63898	Canola	nucleus	11.53	25.38
CDX72275	Canola	cytosol	10.62	25.14
CDY11021	Canola	golgi	28.88	25.07
CDX92643	Canola	golgi	29.0	25.07
CDY34291	Canola	golgi	27.85	23.92
CDY03441	Canola	golgi	27.51	23.79
CDY68683	Canola	endoplasmic reticulum, vacuole	11.76	21.15
CDX75770	Canola	mitochondrion, nucleus	14.5	19.13
CDX97571	Canola	mitochondrion	15.18	18.79
CDX98449	Canola	mitochondrion	15.07	18.75
CDX85744	Canola	cytosol	12.44	18.73
CDY40119	Canola	nucleus	12.44	18.66
CDY23262	Canola	nucleus	11.64	18.65
CDX87681	Canola	nucleus	13.13	18.25
CDX76553	Canola	cytosol	13.24	18.07
CDY50263	Canola	cytosol	5.48	17.71
CDY36465	Canola	cytosol	11.64	17.38
CDY37145	Canola	cytosol	12.67	16.67
CDY11838	Canola	nucleus, plastid	15.53	16.61
CDX88651	Canola	nucleus, plastid	15.53	16.5
CDY28224	Canola	endoplasmic reticulum, vacuole	11.07	16.44
CDX68701	Canola	endoplasmic reticulum, extracellular	11.07	16.25
CDX77686	Canola	endoplasmic reticulum	13.81	16.03
CDY57464	Canola	nucleus	15.41	15.92
CDY58499	Canola	endoplasmic reticulum	12.9	15.67
CDY55010	Canola	nucleus	15.18	15.65
CDY32735	Canola	nucleus	14.16	15.48
CDY02782	Canola	nucleus	14.16	15.48
CDX87682	Canola	cytosol	0.0	0.0

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:A0A078IC75	UniProt:A0A078IC75	EnsemblPlants:CDY48465
ProteinID:CDY48465	ProteinID:CDY48465.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005575
GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00091154001	InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443	PFAM:PF01753
ScanProsite:PS00972	PFscan:PS50235	PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF144232	SUPFAM:SSF54001	TMHMM:TMhelix	UniParc:UPI0004EF2401	InterPro:USP_CS	InterPro:USP_dom
InterPro:Znf_MYND	SEG:seg	:	:	:	:

Description

BnaC05g13250DBnaC05g13250D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IC75]

Coordinates

chrLK032775:-:7157..11907

Molecular Weight (calculated)

98582.4 Da

IEP (calculated)

8.056

GRAVY (calculated)

-0.572

Length

876 amino acids

Sequence
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SDISEKRGRA NLLAQMAAEE AFRAETDVRG VRFETMATEN RAPRTRNRTV PAASGSVRAD FVAELRPDSV
101: AATCGVPVNN QGHVCARCFN PAKTRCSRCK SIRYCSGKCQ IIHWRLAHKD ECIPADTCSS SSERVSFEND SVFIREDSST MFSNSTKQTA KGKTSKSSVE
201: FASEGISQID ITPRINTQGR KSIGKPNSSK SSRESFSGEA AASAGGDSKK GHTRHKSRSN IGAVETNSRR HSVDNSCMQM NGQTFESGMQ ESYKNNLGAS
301: SGIRAATLPK SGEQSWTETS KKGQVAAVSK TVRSKDTGMA EESNGISSSS NMGSNLMKMM GLRNFSKHDD RHKNLKMLFP YEEFVKFFQC EVFYLSPRGL
401: VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL SASRILSQMR SINCQIGDGS QEDAHEFLRL LVASMQSICL
501: ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL QDALTQFTRP EDLDGENMFR CSRCAGYVRA RKELSIHEAP
601: NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF SGHYISYVKD LRGNWFRIDD SEIHQVPMTQ VMSEGAYMLF
701: YMRSYPRPQR GEHNSKPQAR HPQPRNEMKE QRKPVNRFKP RADYNKNLVE SSSSEWSLFT SSDEAASFTT ESTRDSFSTV DYADGCHVLD SSSSPFSIFN
801: NLHHNVEPSP HNTVACRMFS GTKPETRYFV EEGEANHNNN TVVMDDTSSH GYYQQSMYVD YETNCQEQTY SYEQNW

Best Arabidopsis Sequence Match ( AT1G17110.3 )
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKMLFP YEEFLKFFQC EVFDLSPRGL VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL
501: SASRILSHMR SINCQIGDGS QEDAHEFLRL LVASMQSICL ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL
601: QDALTQFTRP EDLDGENMYR CSRCAGYVRA RKELSIHEAP NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF
701: SGHYISYVKD LRGNWYRIDD SEIHPVPMTQ VMSEGAYMLF YMRSYPRPQR GEHNGKAPVH HSQPRNEMKE QRKPVNRFKP RADHKNTESS SSEWSLFTSS
801: DEASFTTEST RDSFSTIDYT DVCHVVDSSS PFAIFNNVYH NVEPSPHNTV ACRMFSGTKP ETRYFVEQET NHNNTVVLDA TPSLYPIPAP YPPHDYYDQS
901: MYVNYETNPE FNNGQDQDRT YSYW

Arabidopsis Description

UBP15Ubiquitin-specific protease 15 [Source:UniProtKB/TrEMBL;Acc:F4I642]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.