Factsheet for TraesCS6D01G179700.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 5
golgi 4
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G192600.1	Wheat	plasma membrane	99.18	98.88
TraesCS6B01G231700.4	Wheat	plasma membrane	99.28	98.58
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	83.62	83.79
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	79.53	80.43
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	77.48	78.04
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	79.12	76.84
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	44.93	52.39
GSMUA_Achr2P20080_001	Banana	plasma membrane	50.15	52.07
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	48.72	51.4
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	40.43	45.09
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	40.33	44.93
VIT_19s0140g00200.t01	Wine grape	plasma membrane	45.75	44.83
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	40.12	44.7
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	43.6	44.1
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.02	43.83
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	44.32	43.78
CDX96790	Canola	nucleus	37.26	43.59
CDX83925	Canola	nucleus	37.67	43.45
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	43.91	43.33
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	39.71	41.81
TraesCS4D01G304300.1	Wheat	cytosol	10.75	28.69
TraesCS7D01G125700.1	Wheat	nucleus	10.64	28.42
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	23.85	25.75
TraesCS7D01G280800.4	Wheat	plastid	26.1	25.71
TraesCS2D01G517600.1	Wheat	mitochondrion	9.21	24.32
TraesCS6D01G187000.1	Wheat	nucleus, plastid	10.03	24.02
TraesCS7D01G485600.1	Wheat	golgi, plasma membrane	23.75	21.78
TraesCS1D01G196500.1	Wheat	cytosol	11.26	19.5
TraesCS1D01G331300.1	Wheat	plastid	12.59	19.04
TraesCS6D01G250100.1	Wheat	nucleus	13.1	17.32
TraesCS7D01G149800.1	Wheat	nucleus	14.84	15.47
TraesCS1D01G196600.1	Wheat	nucleus	11.67	13.09
TraesCS2D01G129600.2	Wheat	cytosol	10.24	12.97
TraesCS6D01G339500.1	Wheat	nucleus	13.41	12.68

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009056	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010154	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0048364	GO:GO:0048366	GO:GO:0048367
InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	PFscan:PS50235
PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6D01G179700	EnsemblPlants:TraesCS6D01G179700.1	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND
TIGR:cd02661	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:195479502..195486771

Molecular Weight (calculated)

108914.0 Da

IEP (calculated)

7.138

GRAVY (calculated)

-0.507

Length

977 amino acids

Sequence
(BLAST)

001: MLQPREADVP ALFVVFIVLP VIAYFLLGRW HDSVSKKTRV GVLGQKAAEE AFKVETMACP DVILPGPSLR PMPYLRSVPS LRSEYHECAT CRGPAKTRCS
101: RCKSVRYCSG KCQIIHWRQG HKQTCQQWHV NGGSNSGGLS PTESSEQMPF LTNLNSPLPG GDSHLHDMNF DTVSEPSFAT TDSYILDTDL FLTDRSNMNE
201: SNQSLLSRVN SASVASCEKS NYSVDEETNS SEILSANKVS NNSYGCLDEK NGNHDFTYPL NNTVQQPNNC APETTKCPKA SITVYEPDMG VYFTSDMTSS
301: CEGPYSSATE SLQRSKSSGK YSGRGNAIYM KPPYPPGKVA SSQKTQEVLA SYQYNVHEKN TSCKNEQRSA KSSVSTNNNL QGCTGISKLG ASKVEVLKKP
401: SKFLKTSLVG LINDNKRSKV LFHYEDLVKF FQYEVRGISP RGLFNCGNSC YANAVLQCLM CTKPLMIHLL LRLHSKDCCS KNWCLMCELE QYASTLRESG
501: GPVSPSRILS NLRNIGCRLG GGSQEDAHEF LRHLVMSMQA ACLDGLGGEK QVEQSLQETT LIQQMFGGRL KSKVKCLRCH HESERYENIM DLTLEIHGWV
601: ESLQDALTQF TAPEDLDGDN MYKCGRCCAY VKARKQLSVH EVPNILTVVL KRFQTGKYGK INKCVTFPDM LDMVPFVTGA GDHPPLYFLY AVVVHVDTEN
701: ASFSGHYISY VKDMQGTWLR IDDSEVKAVS LNQVMSEGAY MLFYLRSFPR PPRIYIEKGL LPDPSSSYRH SSKSSKGSSK QEQKQTESLF TSDDQIRGIY
801: DFRPEEEGYR QDQHAKLRSQ NLYHTDDAFA DSVSTDFSDA TSSEWSLFTS SDESSFTTES TRDSFSVVDY GDNAGLDPIT SIFGPYYAPD HPLGNFVSCT
901: RLSPSNPQTR YFPESMGFVS DSSLPTHPYG NVHRGRYPDR ACASSAEPLA SANQRSLYGR YNHSRDGFVQ TSGFCHM

Best Arabidopsis Sequence Match ( AT1G17110.3 )
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKMLFP YEEFLKFFQC EVFDLSPRGL VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL
501: SASRILSHMR SINCQIGDGS QEDAHEFLRL LVASMQSICL ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL
601: QDALTQFTRP EDLDGENMYR CSRCAGYVRA RKELSIHEAP NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF
701: SGHYISYVKD LRGNWYRIDD SEIHPVPMTQ VMSEGAYMLF YMRSYPRPQR GEHNGKAPVH HSQPRNEMKE QRKPVNRFKP RADHKNTESS SSEWSLFTSS
801: DEASFTTEST RDSFSTIDYT DVCHVVDSSS PFAIFNNVYH NVEPSPHNTV ACRMFSGTKP ETRYFVEQET NHNNTVVLDA TPSLYPIPAP YPPHDYYDQS
901: MYVNYETNPE FNNGQDQDRT YSYW

Arabidopsis Description

UBP15Ubiquitin-specific protease 15 [Source:UniProtKB/TrEMBL;Acc:F4I642]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.