Factsheet for TraesCS6A01G192600.1

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
peroxisome 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	peroxisome, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	peroxisome
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G179700.1	Wheat	plasma membrane	98.88	99.18
TraesCS6B01G231700.4	Wheat	plasma membrane	98.27	97.87
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	82.96	83.38
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	78.98	80.12
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	76.94	77.73
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	78.57	76.54
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	44.69	52.27
GSMUA_Achr2P20080_001	Banana	plasma membrane	49.9	51.97
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	48.37	51.19
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	40.1	44.86
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	40.0	44.7
VIT_19s0140g00200.t01	Wine grape	plasma membrane	45.31	44.53
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	39.8	44.47
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	39.8	43.72
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	43.06	43.69
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	43.98	43.58
CDX96790	Canola	nucleus	37.04	43.47
CDX83925	Canola	nucleus	37.45	43.33
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	43.57	43.13
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	39.39	41.59
TraesCS4A01G406600.1	Wheat	cytosol	10.51	28.14
TraesCS2A01G340100.1	Wheat	cytosol	10.41	27.57
TraesCS7A01G282200.4	Wheat	plastid	25.71	25.48
TraesCS2A01G516100.1	Wheat	mitochondrion	9.18	24.32
TraesCS5A01G246000.3	Wheat	vacuole	23.88	24.32
TraesCS6A01G203500.1	Wheat	nucleus, plastid	10.0	24.02
TraesCS7A01G498400.1	Wheat	extracellular, golgi, plasma membrane	23.57	21.79
TraesCS1A01G329200.2	Wheat	plastid	12.55	18.95
TraesCS6A01G264800.1	Wheat	nucleus	13.06	17.44
TraesCS7A01G147900.1	Wheat	nucleus	14.59	15.53
TraesCS1A01G192900.1	Wheat	cytosol	10.2	14.93
TraesCS2A01G127200.3	Wheat	cytosol	10.31	13.5
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	13.67	12.51

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:GO:0000003	GO:GO:0003674	GO:GO:0003824
GO:GO:0004843	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0006464	GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283
GO:GO:0009056	GO:GO:0009791	GO:GO:0009908	GO:GO:0009987	GO:GO:0010154	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0048364	GO:GO:0048366	GO:GO:0048367
InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	PFscan:PS50235
PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001
TMHMM:TMhelix	EnsemblPlantsGene:TraesCS6A01G192600	EnsemblPlants:TraesCS6A01G192600.1	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND
TIGR:cd02661	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6A:+:260425519..260436028

Molecular Weight (calculated)

109302.0 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.494

Length

980 amino acids

Sequence
(BLAST)

001: MLQPREADVP ALFVVFIVLP VIAYFLLGRW HDSVSKKTRV GVLGQKAAEE AFKVETMACP DVILPGPSLR PMPYLRSVPS LRSEYHECAT CRGPAKTRCS
101: RCKSVRYCSG KCQIIHWRQG HKQTCQQWHV NGGSNSGGLS PTESSEQMPF LTNLNSPLPG GDSHLHDMNF DTVSEPSFAT TDSYILDTDL FLTDRSNMNE
201: SNQSLLSIVN SASVASCEKS NYSVDEETNS SEILSANKVS NNSYGCLDEK NGNHDFTYPL NNTVQQPNNC APETTKCPKA SITVYEPDMG VYFTSDMTSS
301: CEGPYSSATE SLQRSKSSCK YSGRGNAIYM KPPYPPGKVV SSQKTQEVLA SYQYNVHQKN TSCKNEQRSA KSSVSTNNNL QGCTGISKLG ASKVEVLKKP
401: SKFLKTSLVG LINDNKRSKE FQVLFCYEDL VKFFQYEVRG ISPRGLFNCG NSCYANAVLQ CLMCTKPLMI HLLLRLHSKD CCSKNWCLMC ELEQYASTLR
501: ESGGPVSPSR ILSNLRNIGC RLGGGSQEDA HEFLRHLVMS MQAACLDGLG GEKQVEQSLQ ETTLIQQMFG GRLKSKVKCL RCHHESERYE NIMDLTLEIH
601: GWVESLQDAL TQFTAPEDLD GDNMYKCGRC CAYVKARKQL SVHEVPSILT VVLKRFQTGK YGKINKCVTF PDMLDMVPFV TGAGDHPPLY FLYAVVVHVD
701: TENASFSGHY ISYVKDMQGT WLRIDDSEVK AVSLNQVMSE GAYMLFYLRS FPRPPRIYIE KGLLPDPSSS YRHSSKSSKG SSKQEQKQTE SLFTSDDQSR
801: GIYDFRPEEE GYRQDQHAKL RSQNLYHTDD AFADSVSTDF SDATSSEWSL FTSSDESSFT TESTRDSFSV VDYGDNAGLD PITSIFGPYY APDHPLGNFV
901: SCTRLSHSNP QTRYFPESMG FVSDSSLPTH PYGNVHRGRY PDRACASSAE PLASANQRSL YGRYNHSRDG FVQTSGFCHM

Best Arabidopsis Sequence Match ( AT1G17110.3 )
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKMLFP YEEFLKFFQC EVFDLSPRGL VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL
501: SASRILSHMR SINCQIGDGS QEDAHEFLRL LVASMQSICL ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL
601: QDALTQFTRP EDLDGENMYR CSRCAGYVRA RKELSIHEAP NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF
701: SGHYISYVKD LRGNWYRIDD SEIHPVPMTQ VMSEGAYMLF YMRSYPRPQR GEHNGKAPVH HSQPRNEMKE QRKPVNRFKP RADHKNTESS SSEWSLFTSS
801: DEASFTTEST RDSFSTIDYT DVCHVVDSSS PFAIFNNVYH NVEPSPHNTV ACRMFSGTKP ETRYFVEQET NHNNTVVLDA TPSLYPIPAP YPPHDYYDQS
901: MYVNYETNPE FNNGQDQDRT YSYW

Arabidopsis Description

UBP15Ubiquitin-specific protease 15 [Source:UniProtKB/TrEMBL;Acc:F4I642]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.