Factsheet for GSMUA_Achr3P03560_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, vacuole, plasma membrane

Predictor Summary:

nucleus 1
extracellular 4
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, plasma membrane, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole
YLoc:	plasma membrane

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20080_001	Banana	plasma membrane	72.31	64.4
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	68.97	62.42
GSMUA_Achr7P05090_001	Banana	vacuole	26.49	47.54
Os02t0244300-01	Rice	endoplasmic reticulum, plasma membrane	52.98	45.54
TraesCS6D01G179700.1	Wheat	plasma membrane	52.39	44.93
TraesCS6A01G192600.1	Wheat	plasma membrane	52.27	44.69
OQU84698	Sorghum	endoplasmic reticulum, plasma membrane, vacuole	51.31	44.51
TraesCS6B01G231700.4	Wheat	plasma membrane	52.27	44.51
Zm00001d053450_P066	Maize	endoplasmic reticulum, plasma membrane, vacuole	51.31	44.33
VIT_19s0140g00200.t01	Wine grape	plasma membrane	52.63	44.23
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	46.06	44.01
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	45.82	43.84
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	45.82	43.79
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.06	43.27
CDX96790	Canola	nucleus	43.08	43.23
CDX83925	Canola	nucleus	43.44	42.98
Zm00001d016165_P039	Maize	endoplasmic reticulum, plasma membrane, vacuole	51.07	42.54
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	49.4	41.82
AT1G17110.2	Thale cress	endoplasmic reticulum, plasma membrane	46.06	41.59
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	48.81	41.35
Solyc07g061780.2.1	Tomato	endoplasmic reticulum, plasma membrane, vacuole	47.49	41.2
GSMUA_Achr10P...	Banana	golgi	16.59	30.89
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	14.08	30.57
GSMUA_Achr10P...	Banana	nucleus	14.56	30.05
GSMUA_Achr7P19010_001	Banana	nucleus	16.23	29.57
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	12.29	29.26
GSMUA_Achr5P22990_001	Banana	vacuole	30.79	28.7
GSMUA_Achr10P...	Banana	cytosol	11.81	28.7
GSMUA_AchrUn_...	Banana	golgi, vacuole	32.82	27.15
GSMUA_Achr8P14390_001	Banana	cytosol	11.69	26.78
GSMUA_Achr7P19170_001	Banana	cytosol	4.18	26.12
GSMUA_Achr10P...	Banana	nucleus	11.58	25.94
GSMUA_Achr7P19160_001	Banana	mitochondrion	9.43	25.9
GSMUA_Achr1P11380_001	Banana	cytosol	11.34	25.47
GSMUA_Achr7P05330_001	Banana	cytosol	9.31	24.45
GSMUA_Achr3P04660_001	Banana	nucleus	16.35	22.83
GSMUA_Achr8P09770_001	Banana	cytosol	11.34	22.2
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	14.2	20.31
GSMUA_Achr7P17050_001	Banana	plastid	12.65	20.31
GSMUA_Achr9P10330_001	Banana	mitochondrion	15.04	20.22
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	26.13	19.36
GSMUA_Achr4P01920_001	Banana	nucleus	16.83	14.6
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	13.25	13.07

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005575	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr3G03560_001	EnsemblPlants:GSMUA_Achr3P03560_001	EnsemblPlants:GSMUA_Achr3T03560_001	InterPro:IPR002893
InterPro:IPR028889	UniProt:M0SBH4	PFAM:PF00443	PFAM:PF01753	ScanProsite:PS00972	PFscan:PS50235
PFscan:PS50865	PANTHER:PTHR45492	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001
TMHMM:TMhelix	UniParc:UPI000296C106	InterPro:USP_CS	InterPro:USP_dom	InterPro:Znf_MYND	SEG:seg

Description

ubiquitin carboxyl-terminal hydrolase family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G03560_001]

Coordinates

chr3:-:2307194..2315594

Molecular Weight (calculated)

94241.8 Da

IEP (calculated)

8.094

GRAVY (calculated)

-0.546

Length

838 amino acids

Sequence
(BLAST)

001: MLQPREADIP ALFIFLVVLP LFTYFLLGKW NESAKKKARI GILAQLSAEE AYQIEATTSV HVPLVLPPSK TGFHECARCF APATTRCSRC KSVRYCSGKC
101: QIIHWRRAHK HECHRWHGSS VNVSAGLILT DTVHHKSSFP GNGVKEITHS NLHNDMDDPS SIAIETSENS EMGRKTSDKG VINKSKGAKP TNDEIATHAC
201: VQDYGHDSFA QASFTDHFTE ISPADAPIEQ KLGYGSLTAT SSEVLLTKDA NNSSNARNAM NQHNKSAGET RKGLKQKGSP ESSSLFHLDK HVITECQSGA
301: NINTEKVDTL ETGLSSANEA VHDSYPDEHS TKQSMMFRKP PYTLRHSTPL MQKFPENGSR EYRSQGPGRN SDKEQGSKIP HKIASLDNHL QDLNKNPSIE
401: GSLAAAEKTS KVLKWNLVGS KNYNKKNKVS QMLFPYEDLV KFFQRKEGGI YPRGLLNCGN SCYANAVLQC LTGTKPLMVY LLQRSHSRTC RVKEWCLMCE
501: LEQHVSMLRE GGGPLSPSRI LSNMRNIGCR MGGGNQEDAH EFLRLLVMQM QSVCLERLGG EKEIDPRLQE TTLIQQIFGG RLKSKVKCLR CHLESERYER
601: IMDLTLEIHG WVESLEDALT QFTAPEDLDG ENMYRCGRCS TYVKARKQLS VHEVPNILTI VLKRFQTGKY GKINKCVTFP DMLDMIPFMT GTADNPPLYL
701: LYAVVVHLDA FNASFSGHYV SYVKDLEGTW FKIDDSEVQP VPLSQVMSEG AYMLFYSRSF PRPPRAYTGK SLSRPPTWTW KSKKDLRNGQ HGHEIFMEFS
801: DATSSDWTLF TSSDDSSFTT ESTRDSFSTV DYWRQDQP

Best Arabidopsis Sequence Match ( AT1G17110.3 )
(BLAST)

001: MLEPRGADIP ILFLVLVVLP VVAYILLGKW SNISEKRVRA NLLAQMAAEE ALRAETVVNA DRGVRFESVA TENRAQRTRT KTVSAGGGAV RAEFDAGARE
101: TVAEQRSDSV TATCGVTVVA PVNNNELHVC ARCFGPAKTR CSRCKSVRYC SGKCQIIHWR VAHKDECVPV ESCSSSSERV SFEKDSVLYD HGMDSTMYSN
201: NTTQAAKGKT SKSSVDFASL GISQNDITPQ INTQGRKSVG KQHSSKANRE SCRRDSATVF DSSDEAASAG GDNKTSHIKH KSRGNSYAAE TNPRRHSVDS
301: SAVQMNGQSF VSGMQESHKH ENNLGVRSSF GCPNTQYPSN GTRTATLPRT GINKSGEQSC TETSKKGQVA AVSKTVRSKD TGISEESNGI SSTMGIMKMM
401: GLRNSTKHDD RYKNLKMLFP YEEFLKFFQC EVFDLSPRGL VNCGNSCYAN AVLQSLTCTK PLVAYLLRRS HSRSCSGKDW CLMCELEQHV MMLRESGGPL
501: SASRILSHMR SINCQIGDGS QEDAHEFLRL LVASMQSICL ERLGGETKVD PRLQETTLVQ HMFGGRLRSK VKCLRCDHES ERYENIMDLT LEIYGWVESL
601: QDALTQFTRP EDLDGENMYR CSRCAGYVRA RKELSIHEAP NILTIVLKRF QEGRYGKINK CISFPEMLDM IPFMTRTGDV PPLYMLYAVI VHLDTLNASF
701: SGHYISYVKD LRGNWYRIDD SEIHPVPMTQ VMSEGAYMLF YMRSYPRPQR GEHNGKAPVH HSQPRNEMKE QRKPVNRFKP RADHKNTESS SSEWSLFTSS
801: DEASFTTEST RDSFSTIDYT DVCHVVDSSS PFAIFNNVYH NVEPSPHNTV ACRMFSGTKP ETRYFVEQET NHNNTVVLDA TPSLYPIPAP YPPHDYYDQS
901: MYVNYETNPE FNNGQDQDRT YSYW

Arabidopsis Description

UBP15Ubiquitin-specific protease 15 [Source:UniProtKB/TrEMBL;Acc:F4I642]
SUBAcon: [endoplasmic reticulum,plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.