Factsheet for GSMUA_Achr7P05330_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038315	Potato	nucleus	61.44	43.75
PGSC0003DMT400086994	Potato	cytosol	17.55	42.11
VIT_04s0008g06860.t01	Wine grape	nucleus	65.83	37.97
Solyc08g068810.2.1	Tomato	cytosol	62.07	36.07
Bra028566.1-P	Field mustard	cytosol	56.43	35.71
KRH05289	Soybean	nucleus	59.87	34.41
KRH15753	Soybean	nucleus	58.93	33.94
GSMUA_Achr7P17050_001	Banana	plastid	55.17	33.72
AT5G10790.1	Thale cress	cytosol	57.37	32.85
CDX85744	Canola	cytosol	56.74	31.1
CDY40119	Canola	nucleus	56.43	30.82
GSMUA_Achr10P...	Banana	cytosol	24.76	22.9
GSMUA_Achr7P19160_001	Banana	mitochondrion	21.63	22.62
GSMUA_Achr8P14390_001	Banana	cytosol	25.08	21.86
GSMUA_Achr10P...	Banana	nucleus	25.08	21.39
GSMUA_Achr4P19070_001	Banana	cytosol, golgi, mitochondrion, plastid	22.57	20.45
GSMUA_Achr1P11380_001	Banana	cytosol	21.32	18.23
GSMUA_Achr7P05090_001	Banana	vacuole	25.08	17.13
GSMUA_Achr7P19170_001	Banana	cytosol	6.9	16.42
GSMUA_Achr8P09770_001	Banana	cytosol	21.0	15.65
GSMUA_Achr5P13990_001	Banana	endoplasmic reticulum	25.71	13.99
GSMUA_Achr9P10330_001	Banana	mitochondrion	26.96	13.8
GSMUA_Achr3P04660_001	Banana	nucleus	25.71	13.67
GSMUA_Achr10P...	Banana	nucleus	14.73	11.58
GSMUA_Achr7P19010_001	Banana	nucleus	15.36	10.65
GSMUA_Achr5P22990_001	Banana	vacuole	26.33	9.34
GSMUA_Achr3P03560_001	Banana	endoplasmic reticulum, plasma membrane, vacuole	24.45	9.31
GSMUA_Achr4P01920_001	Banana	nucleus	27.27	9.01
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	22.88	8.6
GSMUA_Achr3P17560_001	Banana	endoplasmic reticulum, golgi	23.51	8.1
GSMUA_Achr2P20080_001	Banana	plasma membrane	23.82	8.08
GSMUA_Achr10P...	Banana	golgi	11.29	8.0
GSMUA_AchrUn_...	Banana	golgi, vacuole	25.39	8.0
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	9.09	7.51
GSMUA_Achr1P10260_001	Banana	endoplasmic reticulum, plasma membrane	26.33	7.43

Protein Annotations

MapMan:15.3.4.2.2	MapMan:19.2.3.1.1.8	Gene3D:3.90.70.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	EnsemblPlantsGene:GSMUA_Achr7G05330_001	EnsemblPlants:GSMUA_Achr7P05330_001	EnsemblPlants:GSMUA_Achr7T05330_001	InterPro:IPR028889	UniProt:M0TEX3
PFAM:PF00443	PFscan:PS50235	PANTHER:PTHR43961	PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH
SUPFAM:SSF54001	UniParc:UPI000294D4DC	InterPro:USP_dom	SEG:seg	:	:

Description

Ubiquitin carboxyl-terminal hydrolase 22 [Source:GMGC_GENE;Acc:GSMUA_Achr7G05330_001]

Coordinates

chr7:-:3950979..3954757

Molecular Weight (calculated)

36854.7 Da

IEP (calculated)

6.959

GRAVY (calculated)

-0.426

Length

319 amino acids

Sequence
(BLAST)

001: MNSVLQTLLH TPPLKNYFLG DWHNRELCQK QRSRRRRRAV EAGELSCLVC DVDSVFAEAF SGNPTPYSPA RFLFSWWQHS SNLASYEQQD AHEFFISMLD
101: MIHESERSTL QNKVGFGDCH CIAHRVFSGV LRSDVTCTIC GFTSTTYDPC VDLSLDLEPS TDSRSNKSSR ISTLMGCLDL FTRPERLGPD QKLYCQHCEM
201: HQDSVKQMSI RRLPLVLCFH IKRFEHSLRR GTSKKIDQYL QIFAFEGDES DVSNDLSSEF EVFAVITHTG RLESGHYLTY LRLGERWYKC DDAWITQVSE
301: GAVRASQGYM MYYVQKQIK

Best Arabidopsis Sequence Match ( AT5G10790.2 )
(BLAST)

001: MSVKSGADVV AVRSNKKRRL DSQLIIGSNF LVSPRDRREK WTFPLGLRGL NNLGSTCFMN AVLQALVHAP PLRNFWLSGQ HNRDLCPRRT MGLLCLPCDL
101: DVIFSAMFSG DRTPYSPAHL LYSWWQHSTN LATYEQQDSH EFFISLLDRI HENEGKSKCL YQDNEECQCI THKAFSGLLR SDVTCTTCGS TSTTYDPFID
201: ISLTLDSMNG FSPADCRKNR YSGGPSVNAI MPTLSGCLDF FTRSEKLGPD QKLNCQSCGE KRESSKQMSI RRLPLLLCLH VKRFEHSLTR KTSRKIDSYL
301: QYPFRLNMSP YLSSSIIGKR FGNRIFAFDG EGEYDSSSSS SPSAEFEIFA VVTHKGMLES GHYVTYLRLK GLWYRCDDAW INEVEEEVVR GCECYMLFYA
401: QETVIQKAHK ELSYQVISMA DAFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.