Factsheet for VIT_04s0008g06860.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400038315	Potato	nucleus	57.87	71.43
PGSC0003DMT400086994	Potato	cytosol	16.64	69.17
Solyc08g068810.2.1	Tomato	cytosol	67.81	68.31
GSMUA_Achr7P05330_001	Banana	cytosol	37.97	65.83
KRH15753	Soybean	nucleus	65.82	65.7
KRH05289	Soybean	nucleus	64.56	64.32
AT5G10790.1	Thale cress	cytosol	59.67	59.25
Bra028566.1-P	Field mustard	cytosol	53.89	59.13
VIT_11s0118g00280.t01	Wine grape	mitochondrion	30.2	59.01
CDY40119	Canola	nucleus	57.87	54.79
CDX85744	Canola	cytosol	57.14	54.3
VIT_11s0118g00290.t01	Wine grape	nucleus	30.56	48.01
VIT_07s0141g00230.t01	Wine grape	nucleus	16.64	24.93
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	14.47	22.35
VIT_13s0019g01690.t01	Wine grape	cytosol	16.64	16.64
VIT_19s0093g00560.t01	Wine grape	mitochondrion	18.08	15.75
VIT_02s0012g01340.t01	Wine grape	nucleus	14.65	15.43
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	18.99	14.19
VIT_04s0069g00760.t01	Wine grape	nucleus	20.07	12.85
VIT_19s0014g00210.t01	Wine grape	nucleus	19.35	11.97
VIT_00s0199g00030.t01	Wine grape	vacuole	19.35	11.85
VIT_19s0140g00200.t01	Wine grape	plasma membrane	21.16	11.74
VIT_00s0174g00260.t01	Wine grape	nucleus	19.89	11.03
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	20.61	9.31

Protein Annotations

EntrezGene:100255882	wikigene:100255882	MapMan:15.3.4.2.2	MapMan:19.2.3.1.1.8	Gene3D:3.30.40.10	Gene3D:3.90.70.10
MEROPS:C19.A11	ProteinID:CCB46879	ProteinID:CCB46879.1	UniProt:F6H350	EMBL:FN595231	GO:GO:0003674
GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006508	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0008233	GO:GO:0008234	GO:GO:0008270	GO:GO:0009056	GO:GO:0009987
GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR001607
InterPro:IPR013083	InterPro:IPR028889	EntrezGene:LOC100255882	wikigene:LOC100255882	PFAM:PF00443	PFAM:PF02148
ScanProsite:PS00972	PFscan:PS50235	PFscan:PS50271	PANTHER:PTHR43961	PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SMART:SM00290	SUPFAM:SSF54001	SUPFAM:SSF57850	UniParc:UPI000198301E	InterPro:USP_CS
InterPro:USP_dom	ArrayExpress:VIT_04s0008g06860	EnsemblPlantsGene:VIT_04s0008g06860	EnsemblPlants:VIT_04s0008g06860.t01	unigene:Vvi.18783	RefSeq:XP_002283376
RefSeq:XP_002283376.1	InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_UBP	SEG:seg	:	:

Description

Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:F6H350]

Coordinates

chr4:-:6893271..6896272

Molecular Weight (calculated)

63415.6 Da

IEP (calculated)

8.183

GRAVY (calculated)

-0.462

Length

553 amino acids

Sequence
(BLAST)

001: MSKQNPSYTN PKPCKHLADY KLRHGLNGFK TLQNCLKTTP YGRTSVSKHK SETPRCSLCF GYQGRLYFCL ICSSITCSSH ANEHSQSHHG HEIAVDVERA
101: ELYCCVCRDQ VYDPDFDRAV VSKHFMDMPS NVNGVEGVVE ESNKRRRLGL GLELEWKRSK RLISMADRRA KSIFPLGLRG LNNLGNTCFM NSVLQALFHA
201: PPLRNYFLSD RHNRQSCRRR SSDRLCLPCD IDVIFSAVFS GDRTPYSPAR FLYSWWQHSE NLASYEQQDA HEFFISMLDQ IHVKEGKSGN QDKDNRDCQC
301: IAHKAFSGLL RSDVTCTTCG FTSTTYDPCV DISLNLDMSF CPSTGMTNRT TKPNENAIIS TLLGCLDLFT RPEKLGPDQK LYCQNCQERR NSLKQMSIRR
401: LPIVLCLHIK RFEHSTIRKM SRKIDQYLQF PFSLDMTPYL SSSIVRNRFG NRIFTFEGDE SETCTEFEVF AVVTHSGMLE SGHYVTYVRV RNRWYKCDDA
501: WITEVDEGVV RASQCYLMYY VQKGFYYKAS EDLSCLPMSP PGGESYLPIA GCC

Best Arabidopsis Sequence Match ( AT5G10790.1 )
(BLAST)

001: MSARISFLKN PDPCNHLSDY KLRYGTDGYK SFNNLFRCFN DARIKIKLQG IDIPRCSYCS VYQKRLYICL ICRSISCSSH ILLHTQLNKG HDIAIDVERS
101: ELYCCACIDQ VYDSEFDEVV VSKQLFGLGM SVKSGADVVA VRSNKKRRLD SQLIIGSNFL VSPRDRREKW TFPLGLRGLN NLGSTCFMNA VLQALVHAPP
201: LRNFWLSGQH NRDLCPRRTM GLLCLPCDLD VIFSAMFSGD RTPYSPAHLL YSWWQHSTNL ATYEQQDSHE FFISLLDRIH ENEGKSKCLY QDNEECQCIT
301: HKAFSGLLRS DVTCTTCGST STTYDPFIDI SLTLDSMNGF SPADCRKNRY SGGPSVNAIM PTLSGCLDFF TRSEKLGPDQ KLNCQSCGEK RESSKQMSIR
401: RLPLLLCLHV KRFEHSLTRK TSRKIDSYLQ YPFRLNMSPY LSSSIIGKRF GNRIFAFDGE GEYDSSSSSS PSAEFEIFAV VTHKGMLESG HYVTYLRLKG
501: LWYRCDDAWI NEVEEEVVRG CECYMLFYAQ ETVIQKAHKE LSYQVISMAD AFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.