Factsheet for VIT_11s0118g00280.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
golgi 1
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g007640.1.1	Tomato	cytosol	68.9	82.28
TraesCS2B01G544700.1	Wheat	mitochondrion	61.48	47.03
TraesCS2D01G517600.1	Wheat	mitochondrion	60.78	46.49
TraesCS2A01G516100.1	Wheat	mitochondrion	60.07	45.95
KRH03615	Soybean	cytosol	80.57	38.51
KRH20191	Soybean	plastid	79.51	37.88
EES12962	Sorghum	plastid	63.25	31.68
Zm00001d002086_P001	Maize	plastid	62.9	31.62
GSMUA_Achr7P17050_001	Banana	plastid	57.24	31.03
Os04t0647300-01	Rice	nucleus	63.25	30.29
VIT_04s0008g06860.t01	Wine grape	nucleus	59.01	30.2
HORVU2Hr1G114330.1	Barley	cytosol	59.36	30.0
VIT_07s0141g00230.t01	Wine grape	nucleus	23.32	17.89
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	22.26	17.6
VIT_02s0012g01340.t01	Wine grape	nucleus	23.32	12.57
VIT_13s0019g01690.t01	Wine grape	cytosol	19.08	9.76
VIT_19s0093g00560.t01	Wine grape	mitochondrion	21.55	9.61
VIT_19s0014g00210.t01	Wine grape	nucleus	24.73	7.83
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	20.14	7.7
VIT_04s0069g00760.t01	Wine grape	nucleus	22.26	7.29
VIT_00s0174g00260.t01	Wine grape	nucleus	25.09	7.12
VIT_00s0199g00030.t01	Wine grape	vacuole	20.49	6.42
VIT_19s0140g00200.t01	Wine grape	plasma membrane	22.26	6.32
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	22.97	5.31
VIT_11s0118g00290.t01	Wine grape	nucleus	5.3	4.26

Protein Annotations

MapMan:15.3.4.2.2	MapMan:19.2.3.1.1.8	Gene3D:3.90.70.10	ProteinID:CCB49913	ProteinID:CCB49913.1	UniProt:F6HCG7
EMBL:FN595515	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43961
PANTHER:PTHR43961:SF3	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	TIGR:TC54081	UniParc:UPI0002108A58
InterPro:USP_CS	InterPro:USP_dom	ArrayExpress:VIT_11s0118g00280	EnsemblPlantsGene:VIT_11s0118g00280	EnsemblPlants:VIT_11s0118g00280.t01	unigene:Vvi.4421
RefSeq:XP_003633155	RefSeq:XP_003633155.1	:	:	:	:

Description

No Description!

Coordinates

chr11:-:5943925..5946782

Molecular Weight (calculated)

32230.6 Da

IEP (calculated)

8.294

GRAVY (calculated)

-0.333

Length

283 amino acids

Sequence
(BLAST)

001: MVLSASLQVM FLHSRSQAWK RRMVALGNGE CCIAHRVFSG ILRSDVMCMA CGFTSTTYDP CVDISLDLEP NQGVSTKMGS TKSHHSCNGE ADSMNSSQNC
101: GTSTLMGCLD RFTRPERLGS DQKFFCQQCQ VRQESLKQMS IRKLPLVSCF HIKRFEHSSI RNMSRKVDRY LQFPFSLDMA PYLSSSILRS RFGNRIFSFD
201: GDEPDASNEL SSEFELFAVV THTGKLDAGH YVTYLRLSNQ WYKCDDAWIT QVNENIVRAA QGYMMFYVQK MLYYKASEKP TPS

Best Arabidopsis Sequence Match ( AT5G10790.2 )
(BLAST)

001: MSVKSGADVV AVRSNKKRRL DSQLIIGSNF LVSPRDRREK WTFPLGLRGL NNLGSTCFMN AVLQALVHAP PLRNFWLSGQ HNRDLCPRRT MGLLCLPCDL
101: DVIFSAMFSG DRTPYSPAHL LYSWWQHSTN LATYEQQDSH EFFISLLDRI HENEGKSKCL YQDNEECQCI THKAFSGLLR SDVTCTTCGS TSTTYDPFID
201: ISLTLDSMNG FSPADCRKNR YSGGPSVNAI MPTLSGCLDF FTRSEKLGPD QKLNCQSCGE KRESSKQMSI RRLPLLLCLH VKRFEHSLTR KTSRKIDSYL
301: QYPFRLNMSP YLSSSIIGKR FGNRIFAFDG EGEYDSSSSS SPSAEFEIFA VVTHKGMLES GHYVTYLRLK GLWYRCDDAW INEVEEEVVR GCECYMLFYA
401: QETVIQKAHK ELSYQVISMA DAFPFADC

Arabidopsis Description

UBP22Ubiquitinyl hydrolase 1 [Source:UniProtKB/TrEMBL;Acc:A0A178UPE9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.