Factsheet for VIT_00s0407g00030.t01

Subcellular Localization

min:

: max

Winner_takes_all: golgi, vacuole

Predictor Summary:

extracellular 5
endoplasmic reticulum 5
vacuole 6
plasma membrane 5
golgi 6
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, vacuole
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	golgi
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0199g00030.t01	Wine grape	vacuole	89.73	73.53
AT5G65450.2	Thale cress	endoplasmic reticulum, golgi, mitochondrion, nucleus	45.68	45.07
CDY08792	Canola	vacuole	43.24	42.72
Bra024386.1-P	Field mustard	golgi	43.11	41.59
CDY14564	Canola	golgi	42.43	41.21
KRH74502	Soybean	golgi, plasma membrane, vacuole	50.0	39.91
GSMUA_Achr10P...	Banana	golgi	24.05	39.56
KRH69660	Soybean	golgi	48.92	38.59
GSMUA_Achr7P19020_001	Banana	endoplasmic reticulum, golgi	19.86	38.08
GSMUA_Achr5P22990_001	Banana	vacuole	40.68	33.48
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	53.24	32.16
GSMUA_Achr10P...	Banana	nucleus	17.3	31.53
GSMUA_Achr7P19010_001	Banana	nucleus	19.59	31.52
Zm00001d050489_P001	Maize	nucleus	19.19	31.07
HORVU5Hr1G069620.20	Barley	cytosol, nucleus	30.41	30.53
Os08t0478500-01	Rice	plastid	39.73	30.06
GSMUA_AchrUn_...	Banana	golgi, vacuole	41.08	30.01
OQU80649	Sorghum	nucleus	32.57	29.9
Solyc04g076210.2.1	Tomato	nucleus	42.97	28.94
Os09t0464400-00	Rice	endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole	36.22	28.88
TraesCS7A01G282200.4	Wheat	plastid	37.97	28.41
Zm00001d020769_P005	Maize	nucleus	32.84	28.39
TraesCS7B01G179000.2	Wheat	plastid	37.97	28.3
TraesCS5D01G252600.2	Wheat	endoplasmic reticulum, vacuole	34.32	28.07
TraesCS7D01G280800.4	Wheat	plastid	37.57	28.02
OQU89635	Sorghum	vacuole	34.46	27.96
TraesCS5B01G243400.1	Wheat	vacuole	34.05	27.51
VIT_07s0141g00230.t01	Wine grape	nucleus	13.65	27.37
TraesCS5A01G246000.3	Wheat	vacuole	34.32	26.4
HORVU7Hr1G064340.3	Barley	endoplasmic reticulum	34.46	25.68
VIT_19s0140g00200.t01	Wine grape	plasma membrane	33.92	25.18
VIT_04s0069g00760.t01	Wine grape	nucleus	28.92	24.77
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	11.89	24.58
VIT_13s0019g01690.t01	Wine grape	cytosol	15.27	20.43
VIT_11s0118g00280.t01	Wine grape	mitochondrion	7.7	20.14
VIT_04s0008g06860.t01	Wine grape	nucleus	14.19	18.99
VIT_19s0093g00560.t01	Wine grape	mitochondrion	15.95	18.58
VIT_02s0012g01340.t01	Wine grape	nucleus	12.57	17.71
VIT_11s0118g00290.t01	Wine grape	nucleus	7.97	16.76
VIT_19s0014g00210.t01	Wine grape	nucleus	18.92	15.66
VIT_00s0174g00260.t01	Wine grape	nucleus	18.92	14.04

Protein Annotations

MapMan:19.2.3.1.1.7	Gene3D:3.30.60.180	Gene3D:3.90.70.10	MEROPS:C19.A07	ProteinID:CCB58981.1	ncoils:Coil
UniProt:F6HWB7	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0006464	GO:GO:0006511
GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787
GO:GO:0019538	GO:GO:0036459	GO:GO:0046872	InterPro:IPR002893	InterPro:IPR028889	PFAM:PF00443
PFAM:PF01753	ScanProsite:PS00972	ScanProsite:PS01360	PFscan:PS50235	PFscan:PS50865	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF144232	SUPFAM:SSF54001	UniParc:UPI00021099EB	InterPro:USP_CS	InterPro:USP_dom
ArrayExpress:VIT_00s0407g00030	EnsemblPlantsGene:VIT_00s0407g00030	EnsemblPlants:VIT_00s0407g00030.t01	InterPro:Znf_MYND	SEG:seg	:

Description

Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F6HWB7]

Coordinates

chrUn:+:27818755..27825632

Molecular Weight (calculated)

78213.9 Da

IEP (calculated)

6.945

GRAVY (calculated)

-0.294

Length

740 amino acids

Sequence
(BLAST)

001: MGNLGFYSLF SLVVFVVGVI LRQKWRNAAE RKEEIMRLVA MASEEAAAVE LEAAVEYSSI PVARRYQCAA CYGPATTRCS QCKAVRYCSG KCQIKHWRQG
101: HKNECVPPTP TSAMQFNDGS GFGGKTTSEN HDVLGSSTPD SSKGLSDDIS CDSFVTISNV NNIISTACAS KLNQMKSICD DEVDHFQSQF PKAKTAICDD
201: TRPRSLSNKK SNGGARHSDA SKHRSSPLLS RSGSDFLASD SRNEPQVKCK EVSSVSSTVS DHSSPAPEGH SASVAKSAKH TSPNIHSEVA GLQQNAYNGL
301: RTSVRKVAQH FRASKQSKPQ LLGIGNGIAG KYNHKMLFPY ELFMELYSWE KVELSPFGLM NCGNSCYANA VLQCLTFTRP LASYLLQGLH SKACPKEDWC
401: FICEFECLIL EAREGKSPLS PMGILSQIQR IGSHLGHGRE EDAHEFLRYA VDTMQSVCLK DTGVVGPLAE DTTLVGLTFG GYLLSKIKCM KCRGKSERCE
501: RMMDLTVEID GDIGTLEEAL AQFTATEILD GENKYQCGRC RSYEKAKKKL MVLEAPNILT IVLKRFQSSN FGKLNKSVRF PETLNMTPYM SGTDDRYPVY
601: SLYAVVVHLD IMNAAFSGHY VCFVKNFLGD WFRIDDXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX FLGDWFRIDD STVTPVELDR VLLEGAYMLL
701: YARETEDEEL GSCSFQPCCY QTEIQLSSSR CGSFYDTTEA

Best Arabidopsis Sequence Match ( AT5G65450.2 )
(BLAST)

001: MPVSLESETL GFRCLLIGCM MLVFLLIRRQ WRSASVRREE VIRLIALATE ESYLAEEVRP ATVDYGGDSV SDVYRCAVCL YPTTTRCSQC KSVRYCSSKC
101: QILHWRRGHK EECRSPDYDE EKEEYVQSDY DAKESNVDFP SRGTAYESSS NVSVDVACDM STSRPSIHKV QPRSEAVDFT TSLNIKDNLY ETRPLSRKKS
201: RNRTDKVESA SNYSKGKTDA KLRKLGNQNS RRSGDSANMS ISDQFLSVGF EEEMNALKHE RITSEPSSAS AAMSSSSTLL LPSKANSKPK VSQASSSGLK
301: TSVQKVVQHF RPPQSSKKSQ PSSSIDEMSF SYELFVKLYC DRVELQPFGL VNLGNSCYAN AVLQCLAFTR PLISYLIRGL HSKTCRKKSW CFVCEFEHLI
401: LKARGGESPL SPIKILSKLQ KIGKHLGPGK EEDAHEFLRC AVDTMQSVFL KEAPAAGPFA EETTLVGLTF GGYLHSKIKC MACLHKSERP ELMMDLTVEI
501: DGDIGSLEEA LAQFTAYEVL DGENRYFCGR CKSYQKAKKK LMILEGPNIL TVVLKRFQSD NFGKLSKPIH FPELLDISPY MSDPNHGDHP VYSLYAVVVH
601: LDAMSTLFSG HYVCYIKTLD GDWFKIDDSN VFPVQLETVL LEGAYMLLYA RDSPRPVSKN GGRKSKQRRN LAAIPSRKGN KKQRDGDNNS LLPRVDWSSG
701: SLSSMFSSSD TTSSCSTKDS SGIENLSDYL FGGVEPVWKW DRHNKSQTFD

Arabidopsis Description

UBP17ubiquitin-specific protease 17 [Source:TAIR;Acc:AT5G65450]
SUBAcon: [mitochondrion,endoplasmic reticulum,golgi,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.