Factsheet for VIT_13s0019g01690.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P11380_001	Banana	cytosol	49.73	73.73
CDX72275	Canola	cytosol	47.56	71.08
Bra024037.1-P	Field mustard	cytosol	47.38	65.5
KRH39864	Soybean	cytosol	60.94	63.35
KRH23933	Soybean	cytosol	61.84	63.22
GSMUA_Achr8P09770_001	Banana	cytosol	48.46	62.62
CDY23262	Canola	nucleus	57.5	58.14
OQU81355	Sorghum	cytosol, nucleus, plastid	8.14	57.69
Solyc01g068240.2.1	Tomato	cytosol	54.79	56.85
Bra010268.1-P	Field mustard	cytosol	57.87	56.24
AT4G30890.2	Thale cress	cytosol	54.79	54.99
CDY36465	Canola	cytosol	57.14	53.83
CDY28224	Canola	endoplasmic reticulum, vacuole	56.6	53.05
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	56.6	53.05
CDX68701	Canola	endoplasmic reticulum, extracellular	56.78	52.6
PGSC0003DMT400033182	Potato	cytosol	13.2	51.77
Zm00001d022414_P001	Maize	cytosol	50.99	51.09
PGSC0003DMT400033184	Potato	cytosol	16.82	50.82
Os07t0661300-01	Rice	cytosol, plasma membrane	44.48	50.31
PGSC0003DMT400033175	Potato	mitochondrion	13.92	46.11
PGSC0003DMT400033173	Potato	mitochondrion	23.51	36.62
TraesCS2A01G127200.3	Wheat	cytosol	48.82	36.1
HORVU2Hr1G022340.2	Barley	cytosol	48.82	35.57
TraesCS2D01G129600.2	Wheat	cytosol	48.46	34.76
TraesCS2B01G149000.2	Wheat	cytosol	48.28	34.63
VIT_07s0141g00230.t01	Wine grape	nucleus	18.08	27.1
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	15.91	24.58
Zm00001d007096_P007	Maize	mitochondrion	49.37	23.08
VIT_11s0118g00280.t01	Wine grape	mitochondrion	9.76	19.08
VIT_04s0008g06860.t01	Wine grape	nucleus	16.64	16.64
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	20.43	15.27
VIT_02s0012g01340.t01	Wine grape	nucleus	14.1	14.86
VIT_19s0093g00560.t01	Wine grape	mitochondrion	16.27	14.17
VIT_11s0118g00290.t01	Wine grape	nucleus	8.86	13.92
VIT_00s0199g00030.t01	Wine grape	vacuole	20.61	12.62
VIT_19s0014g00210.t01	Wine grape	nucleus	19.35	11.97
VIT_04s0069g00760.t01	Wine grape	nucleus	18.44	11.81
VIT_19s0140g00200.t01	Wine grape	plasma membrane	21.16	11.74
VIT_00s0174g00260.t01	Wine grape	nucleus	19.53	10.83
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	21.16	9.55

Protein Annotations

EntrezGene:100261998	wikigene:100261998	MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	EMBL:AM424959	MEROPS:C19.A01
MEROPS:C19.A14	ProteinID:CAN75583	ProteinID:CAN75583.1	ProteinID:CBI17749	ProteinID:CBI17749.3	UniProt:D7SQ20
EMBL:FN594963	GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
EntrezGene:LOC100261998	wikigene:LOC100261998	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR44747	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0001984751	InterPro:USP_CS
InterPro:USP_dom	ArrayExpress:VIT_13s0019g01690	EnsemblPlantsGene:VIT_13s0019g01690	EnsemblPlants:VIT_13s0019g01690.t01	unigene:Vvi.16565	RefSeq:XP_002268974
RefSeq:XP_002268974.1	:	:	:	:	:

Description

No Description!

Coordinates

chr13_random:-:3142649..3149010

Molecular Weight (calculated)

61065.6 Da

IEP (calculated)

6.564

GRAVY (calculated)

-0.369

Length

553 amino acids

Sequence
(BLAST)

001: MHKMSDSKLL LFGSFTEDET RSLLRLPSGN AEKPAAKKEL QFGSVDFVTG RALASVGNEL CRQADSSKGP IDFCSSNLLK KDDETKSVDG VNKLSSEAAG
101: TPKENGGVHD FTHSSPLGNG VVNELNPDRF NLDSLCLSQN KEHLNQFQSL ESHVVEEECS KERDLNGTID DSSTFVPLKK EILKAPNGPA PAVKNLLPRG
201: LINSGNLCFL NATLQALLSC TPFIQLLQEL RIRDIPKVGY PTLTAFAEFV SEFDMPTDLS LKKKDLNGVE TGRPFSPAMF EGVLKNFTPD VPNKISGRPR
301: QEDAQEFLSF VMDQMHDELL KLEGFFSNLN GGKSSLVSSA EDDEWETVGP KNKSAVTRTQ SFVPSELSKI FGGQLRSVVK ARGNKASATV QPFLLLHLDI
401: LPEAIYTIED ALRLFSAPET LEGYRTSGTG KAGLVTASKS VKIQKLSEIM ILHLMRFYYD ENQGSTKLHK PVTFPLELVL GRELLVSPTT EGRKYELVAT
501: ITHHGRDPSK GHYTTDARHH SGHWLRFDDS AVNVVSTSKV LHEHPYVLFY KQV

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.