Factsheet for VIT_19s0093g00560.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
plasma membrane 1
mitochondrion 3
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_12s0028g02240.t01
VIT_18s0001g09830.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	VIT_12s0028g02240.t01	AT2G42580.1	19000166
AT3G14400.1	VIT_18s0001g09830.t01	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH43852	Soybean	nucleus	62.83	62.25
KRH13611	Soybean	nucleus	62.68	61.04
PGSC0003DMT400071055	Potato	mitochondrion	51.97	53.4
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	57.64	53.35
Zm00001d000312_P002	Maize	plastid	23.31	52.67
AT3G14400.1	Thale cress	mitochondrion	52.6	50.53
CDX75770	Canola	mitochondrion, nucleus	50.39	48.19
GSMUA_Achr9P10330_001	Banana	mitochondrion	47.24	48.15
Bra027341.1-P	Field mustard	mitochondrion	51.81	47.89
CDX98449	Canola	mitochondrion	51.97	46.88
CDX97571	Canola	mitochondrion	51.81	46.47
TraesCS1D01G331300.1	Wheat	plastid	42.68	41.95
Os05t0510300-01	Rice	plastid	42.52	41.93
HORVU1Hr1G077630.2	Barley	plastid	42.83	41.91
TraesCS1B01G342600.2	Wheat	plastid	42.52	41.8
TraesCS1A01G329200.2	Wheat	plastid	42.68	41.76
KXG22316	Sorghum	plastid	41.42	38.85
Zm00001d010710_P002	Maize	plastid	41.1	38.21
Zm00001d000313_P001	Maize	nucleus	17.32	29.73
VIT_07s0141g00230.t01	Wine grape	nucleus	14.8	25.47
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	13.07	23.18
VIT_11s0118g00280.t01	Wine grape	mitochondrion	9.61	21.55
VIT_02s0012g01340.t01	Wine grape	nucleus	16.06	19.43
VIT_04s0008g06860.t01	Wine grape	nucleus	15.75	18.08
VIT_13s0019g01690.t01	Wine grape	cytosol	14.17	16.27
VIT_19s0014g00210.t01	Wine grape	nucleus	22.68	16.11
VIT_00s0407g00030.t01	Wine grape	golgi, vacuole	18.58	15.95
VIT_00s0174g00260.t01	Wine grape	nucleus	24.41	15.55
VIT_04s0069g00760.t01	Wine grape	nucleus	20.32	14.93
VIT_00s0199g00030.t01	Wine grape	vacuole	20.32	14.29
VIT_19s0140g00200.t01	Wine grape	plasma membrane	21.89	13.94
VIT_11s0118g00290.t01	Wine grape	nucleus	6.46	11.65
VIT_18s0001g07370.t01	Wine grape	golgi, vacuole	20.94	10.86

Protein Annotations

EntrezGene:100253154	wikigene:100253154	MapMan:19.2.3.1.1.11	Gene3D:3.90.70.10	MEROPS:C19.A13	ProteinID:CBI32923
ProteinID:CBI32923.3	UniProt:D7TR00	EMBL:FN596009	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579
GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889	EntrezGene:LOC100253154	wikigene:LOC100253154
PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	TIGR:TC63135	UniParc:UPI0001BE3AF4	InterPro:USP_CS	InterPro:USP_dom
ArrayExpress:VIT_19s0093g00560	EnsemblPlantsGene:VIT_19s0093g00560	EnsemblPlants:VIT_19s0093g00560.t01	unigene:Vvi.14136	RefSeq:XP_002271760	RefSeq:XP_002271760.1
RefSeq:XP_002271760.2	:	:	:	:	:

Description

No Description!

Coordinates

chr19:-:17668309..17700359

Molecular Weight (calculated)

70668.4 Da

IEP (calculated)

9.607

GRAVY (calculated)

-0.514

Length

635 amino acids

Sequence
(BLAST)

001: MALQMTWQPS LLHQKRKNGP PLGLKNLGNS CYLNSVLQCL TYTPPLANFC LNHLHSSLCD SAVDRKRECP FCILEKRIVR SLSMDLTQDA PSKIQSCLRI
101: FAEHFRLGRQ EDAHEFLRYV IDACHNTCLR LKKLRRKGNN DNGPSTTSVV KDIFGGALQS QVKCLSCGAE SNKTDEIMDI SLDVLHFNSL KQALQNFFQP
201: EVLDGNNKYK CDNCKKLVSA RKQMSILQAP NVLVIQLKRF EGLYGGKIDK LIAFEEVLVL SSYMNKASQD SHPEYNLFAT IVHSGYSPES GHYYAYIKDA
301: MGRWYCCNDS YVSLSTLQGV LSEKVYILFF SRTNARISPP SKAFASHNVK NRDCNGNNTS KNPRTALPVK TRHTKQNVEH SSGMDTSTIS KVDKVPSSLQ
401: IKSNSFEKTV SKRVLATGNG KLDVHKNQIL EKNGDVVEKS EKGTPSLANS NGFSINKRVD AADSVNGFVS ANENDKLQNI SGNSGKVDLY EGNVVKSRMT
501: AEGRSNFHEV HNGGVKCPPG VSGVKRKSQD KGSCILLAQD AHSLAKVEEF KDGLKKEASL VLRSCGWTDR LYIFMHSRKR LCAQKSGDPP SSNESKKSFI
601: ADAKQSFISQ IPESLKEKLI ERLKSFSQEK QVSGP

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.