Factsheet for Bra027341.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000267.1-P
Bra004709.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G14400.1	Bra000267.1-P	AT2G42580.1	19000166
AT3G14400.1	Bra004709.1-P	AT2G42580.1	19000166

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX97571	Canola	mitochondrion	98.25	95.34
CDX98449	Canola	mitochondrion	96.65	94.32
AT3G14400.1	Thale cress	mitochondrion	76.86	79.88
Zm00001d000312_P002	Maize	plastid	21.83	53.38
VIT_19s0093g00560.t01	Wine grape	mitochondrion	47.89	51.81
KRH43852	Soybean	nucleus	48.33	51.79
KRH13611	Soybean	nucleus	47.45	50.0
PGSC0003DMT400071055	Potato	mitochondrion	43.81	48.71
Solyc07g056520.2.1	Tomato	cytosol, golgi, nucleus, plastid	47.45	47.52
GSMUA_Achr9P10330_001	Banana	mitochondrion	39.74	43.82
Os05t0510300-01	Rice	plastid	36.39	38.82
HORVU1Hr1G077630.2	Barley	plastid	35.81	37.9
TraesCS1D01G331300.1	Wheat	plastid	35.52	37.77
TraesCS1B01G342600.2	Wheat	plastid	35.37	37.62
TraesCS1A01G329200.2	Wheat	plastid	35.52	37.6
KXG22316	Sorghum	plastid	35.37	35.89
Zm00001d010710_P002	Maize	plastid	34.79	34.99
Bra038533.1-P	Field mustard	nucleus	13.68	26.48
Bra010647.1-P	Field mustard	nucleus	14.12	26.08
Zm00001d000313_P001	Maize	nucleus	13.1	24.32
Bra007837.1-P	Field mustard	nucleus	16.59	22.35
Bra011823.1-P	Field mustard	nucleus	14.26	22.22
Bra024037.1-P	Field mustard	cytosol	12.37	21.25
Bra011290.1-P	Field mustard	vacuole	18.34	20.59
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	18.63	20.29
Bra028566.1-P	Field mustard	cytosol	13.25	18.06
Bra006790.1-P	Field mustard	nucleus, plastid	21.54	17.81
Bra020400.1-P	Field mustard	nucleus	21.54	17.77
Bra022060.1-P	Field mustard	nucleus	16.89	17.44
Bra021031.1-P	Field mustard	nucleus	15.87	16.98
Bra024386.1-P	Field mustard	golgi	18.92	16.95
Bra025000.1-P	Field mustard	endoplasmic reticulum	16.74	15.78
Bra002683.1-P	Field mustard	nucleus	22.27	15.58
Bra010268.1-P	Field mustard	cytosol	12.81	15.47
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	19.51	15.28
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	12.95	15.08
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	19.07	14.69
Bra019219.1-P	Field mustard	golgi	19.8	13.44
Bra013814.1-P	Field mustard	golgi	19.51	13.14

Protein Annotations

Gene3D:3.90.70.10	MapMan:35.1	EnsemblPlantsGene:Bra027341	EnsemblPlants:Bra027341.1	EnsemblPlants:Bra027341.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	UniProt:M4EEX9	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235
PANTHER:PTHR45511	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002547DC4	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT3G14400 (E=6e-276) UBP25 | UBP25 (UBIQUITIN-SPECIFIC PROTEASE 25); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA05:+:20420547..20424011

Molecular Weight (calculated)

76269.9 Da

IEP (calculated)

8.901

GRAVY (calculated)

-0.730

Length

687 amino acids

Sequence
(BLAST)

001: MGYKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTYTPPLAN FCLNHKHSSH CDSFVDGERK RDCPFCIVEK RIARSLSVDH AIDAPNKISS
101: CLKIFAEHFK FGRQEDAHEF LRYVIDACHN TSLRLKKLRT KGGGGPESVN GSSSSSSTEV KEIFGGAMQS QVKCLPCGAE SNKADEIMDI SLEISNSSSV
201: KESLQKFFQP EILDGNNKYK CESCKKLVTA RKQMSVLQAP NILVIQLKRF EGIYGGKIDK PITFGEILFL STFMSKSSKD PQPEYKLFGI IVHSGYSPES
301: GHYYAYVKDS LNRWFCCNDA SVTHSTLQEV LSEKAYILFF SRINQRPASA KNLVTTSNGT TSHEVNGSET PRPKKFIGPL NNVSMQQPRA EQSFKKDNNN
401: LASSKPHQFI RPLKDANMKP REEQPFHKKN ADSPQVEKAP LKPHAKISIS VNLGAKRVSP TVNGRLSFDQ DQDLAPEADK ENIGSGSAKR VYTCSEKKFG
501: TENGGNGVKE NGSAQASSSS SNNNEVSLHP HERSNGSRNG GDHHHKDSLY SCKSNGSQNG TDQEEIEKDG VSKPQPKALE SSTNGDERCI FLRKDKSSRD
601: QLEAIKESLQ EDVSSYLRSC GWYDEVHKSM RAKKRLLGEL SGGDGEDGND LKRRLIADVE SSLSQIPDEL KADLVNCLSR IGKKKYS

Best Arabidopsis Sequence Match ( AT3G14400.1 )
(BLAST)

001: MGFKLQMSWM PSLLSQKRRN GPPLGLRNLG NTCYLNSVLQ CLTFTPPLAN FCLTHKHSSH CDTYVDGERK RDCPFCIVEK RIARSLSVDL TTDAPNKISS
101: CLKIFAEHFK LGRQEDAHEF LRYVIDACHN TSLRLKKLRY NGNEPFNGNS VVKEIFGGAL QSQVKCLSCG AESNKADEIM DISLEILQSS SVKESLQKFF
201: QSEILDGNNK YRCESCEKLV TARKQMSILQ APNILVIQLK RFGGIFGGKI DKAISFGEIL VLSNFMSKAS KDPQPEYKLF GIIVHSGFSP ESGHYYAYVK
301: DSLGRWYCCN DSFVSLSTLQ EVLSEKAYIL FFSRSNQRPA SAKTLVTSNG TTSHEVNGCE TSNPQKFIGP LNGFNMKPQA EQSFQKGNLA SSKPHKFIRP
401: KPRAEQAPLE DNLLSSKVEK APLRPHAKVS ISVNLGAKRV SPVNGRLSFH QDENIAPKAN KENSVSVLPT KVNSGTERKF GTENGGNGVK ENGSAPGSSN
501: HKVALHPHER SNGSSNGGDH HKDNLHPCGS NGSQNGTAHP ETERNGVSTT QSKGLCSSTK EDPCILLRKD ESSRNELEAI KESLKKDALS HLRSCGWYDK
601: VLISMHAKKR LRTEQSGGED GSDLKRRLIE DVKSSLKSQI PEELKADLVN RIWEISKKKY S

Arabidopsis Description

UBP25Ubiquitin carboxyl-terminal hydrolase 25 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.