Factsheet for Bra006790.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
cytosol 1
nucleus 4

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88651	Canola	nucleus, plastid	99.16	100.0
CDY11838	Canola	nucleus, plastid	93.02	94.38
Bra020400.1-P	Field mustard	nucleus	71.12	70.95
AT5G57990.1	Thale cress	nucleus	69.68	67.4
Bra002683.1-P	Field mustard	nucleus	75.33	63.75
KRH72298	Soybean	cytosol, plastid	32.97	53.94
GSMUA_Achr3P04660_001	Banana	nucleus	32.73	45.33
VIT_19s0014g00210.t01	Wine grape	nucleus	42.96	39.93
Solyc07g005530.2.1	Tomato	nucleus	42.72	38.46
PGSC0003DMT400028924	Potato	nucleus	42.84	38.44
KRH03060	Soybean	nucleus	41.64	38.32
VIT_00s0174g00260.t01	Wine grape	nucleus	45.61	38.01
Os06t0184300-01	Rice	mitochondrion	39.95	35.93
TraesCS7A01G147900.1	Wheat	nucleus	38.99	35.18
HORVU7Hr1G030300.1	Barley	nucleus	39.35	35.16
TraesCS7B01G051400.2	Wheat	nucleus	39.35	34.82
TraesCS7D01G149800.1	Wheat	nucleus	39.11	34.69
GSMUA_Achr4P01920_001	Banana	nucleus	39.95	34.37
EER89337	Sorghum	nucleus	37.91	34.35
Zm00001d045104_P005	Maize	nucleus	36.58	33.67
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	30.93	30.27
TraesCS6D01G339500.1	Wheat	nucleus	35.98	28.94
TraesCS6B01G389500.1	Wheat	nucleus	35.86	27.88
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	35.86	27.82
Bra038533.1-P	Field mustard	nucleus	11.79	27.61
Os02t0795000-01	Rice	nucleus	37.18	26.08
Bra010647.1-P	Field mustard	nucleus	11.31	25.27
Bra024037.1-P	Field mustard	cytosol	10.83	22.5
Bra022060.1-P	Field mustard	nucleus	17.93	22.41
Bra007837.1-P	Field mustard	nucleus	13.72	22.35
Bra021031.1-P	Field mustard	nucleus	17.09	22.12
Bra011823.1-P	Field mustard	nucleus	11.67	22.0
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	16.49	21.71
Bra011290.1-P	Field mustard	vacuole	15.88	21.57
Bra027341.1-P	Field mustard	mitochondrion	17.81	21.54
Bra028566.1-P	Field mustard	cytosol	12.64	20.83
Bra025000.1-P	Field mustard	endoplasmic reticulum	17.21	19.62
Bra010268.1-P	Field mustard	cytosol	11.67	17.05
Bra024386.1-P	Field mustard	golgi	15.4	16.69
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	11.67	16.44
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	17.33	16.14
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	16.49	15.62
Bra019219.1-P	Field mustard	golgi	16.85	13.83
Bra013814.1-P	Field mustard	golgi	16.25	13.24

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra006790	EnsemblPlants:Bra006790.1	EnsemblPlants:Bra006790.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4CRE9	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033
PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002540383	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT5G57990 (E=5e-248) UBP23 | UBP23 (UBIQUITIN-SPECIFIC PROTEASE 23); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA03:+:5058696..5062034

Molecular Weight (calculated)

91729.3 Da

IEP (calculated)

10.088

GRAVY (calculated)

-0.611

Length

831 amino acids

Sequence
(BLAST)

001: MEAASNGSCA VSSSSASAVF RKIEFHPARK PFNGFSNGKS DFKIETLNPS SSSANKQAFF SSPSFKKRDG SDSLENGLDR ELTFNRTIRK IGAGLENLGN
101: TCFLNSVLQC LTYTEPLAAY LQDVGHERRC NVAGFCALCA MQKHVRTALQ ATGKIVAPKY LVSNLRCVSR NFRNCRQEDA HEYMINLLEC MHKCSLPSGV
201: SSESSDAYRS SLVHKIFGGS LRSQVKCAQC SHSSDKFDPF LDLSLDISKA DSLQRALTRF TAVELLDDGA KVYQCERCKQ KVKATKELTV SKAPYVLTVH
301: LKRFEAHRSE KIDKKVEFAS AVDMKPFVSG PYCRTCVEQE GNLKYTLYGV LVHYGRSIHS GHYACFVRTS SGMWYSLDDN RVLQVSEKNV FNQKAYMLFY
401: VRDRQNTSPK NVVPMVKKEN LPTARASVII SSSNRNDQVS GSTVMKASCF NGLGANGRAP LRSCDQGAPA VFNQKDLNAK ETQKDPPSSV DAKEILKREN
501: GAAPLKSCGL SATAVLSQKD SNSKENLQKE LPLSQANGEG SLVKEKMKAA CATLPGKASP LLDGSRNAQI LVNLPTSVAN KDEETLNTAR KTRKGKTKTQ
601: QVGLKLFKLA LGVRKKMKQK RGRSSAVKVI PEELRSKKGA TDQERSTSEI TSEVASGLPG KDNIVSVHNE RNMNSNGNML LGSATGDLKE RANQNGAVLA
701: SDQQPPLRSS DLSKASQIAK RKRESSKDEQ IVLQKDEPTI LTRGLPETVV AKWDEEVSAS KKMGNNEGTK IGYVADEWDE EYDRGKKKKI RIKEEMYKGP
801: NPFQMIASRK QTDTKKKWTQ RMNTAKTGLR I

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.