CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 6
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88651	Canola	nucleus, plastid	94.38	93.81
Bra006790.1-P	Field mustard	nucleus, plastid	94.38	93.02
CDY57464	Canola	nucleus	74.11	71.58
CDY32735	Canola	nucleus	69.47	71.04
CDY02782	Canola	nucleus	68.86	70.41
CDY55010	Canola	nucleus	72.41	69.76
AT5G57990.1	Thale cress	nucleus	70.09	66.82
KRH72298	Soybean	cytosol, plastid	33.33	53.74
GSMUA_Achr3P04660_001	Banana	nucleus	33.21	45.33
VIT_19s0014g00210.t01	Wine grape	nucleus	43.35	39.71
Solyc07g005530.2.1	Tomato	nucleus	43.71	38.79
PGSC0003DMT400028924	Potato	nucleus	43.59	38.55
KRH03060	Soybean	nucleus	42.25	38.32
VIT_00s0174g00260.t01	Wine grape	nucleus	46.52	38.21
Os06t0184300-01	Rice	mitochondrion	40.17	35.61
TraesCS7A01G147900.1	Wheat	nucleus	39.07	34.74
HORVU7Hr1G030300.1	Barley	nucleus	39.44	34.73
TraesCS7B01G051400.2	Wheat	nucleus	39.68	34.61
GSMUA_Achr4P01920_001	Banana	nucleus	40.54	34.37
TraesCS7D01G149800.1	Wheat	nucleus	39.32	34.37
EER89337	Sorghum	nucleus	38.22	34.13
Zm00001d045104_P005	Maize	nucleus	36.63	33.22
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	31.87	30.74
TraesCS6D01G339500.1	Wheat	nucleus	36.75	29.14
TraesCS6B01G389500.1	Wheat	nucleus	36.63	28.06
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	36.63	28.01
CDX76934	Canola	nucleus	11.72	27.12
CDY13770	Canola	nucleus	11.72	26.97
Os02t0795000-01	Rice	nucleus	37.61	25.99
CDX69375	Canola	nucleus	11.6	25.61
CDY68864	Canola	nucleus	11.6	25.54
CDX72275	Canola	cytosol	11.11	24.59
CDY63898	Canola	nucleus	11.84	24.37
CDX87681	Canola	nucleus	17.7	23.02
CDY37145	Canola	cytosol	18.19	22.37
CDX76553	Canola	cytosol	17.22	21.96
CDX75188	Canola	vacuole	16.0	21.44
CDX75770	Canola	mitochondrion, nucleus	17.34	21.39
CDX68773	Canola	nucleus, plasma membrane	16.0	21.34
CDY45587	Canola	endoplasmic reticulum, vacuole	16.48	21.33
CDX76801	Canola	endoplasmic reticulum, golgi, vacuole	16.85	21.2
CDY20330	Canola	vacuole	16.61	21.15
CDY34761	Canola	endoplasmic reticulum, vacuole	16.48	20.96
CDX97571	Canola	mitochondrion	17.83	20.62
CDX98449	Canola	mitochondrion	17.34	20.17
CDY58499	Canola	endoplasmic reticulum	17.58	19.97
CDX77686	Canola	endoplasmic reticulum	18.32	19.87
CDY68683	Canola	endoplasmic reticulum, vacuole	11.6	19.51
CDY23262	Canola	nucleus	11.84	17.73
CDX85744	Canola	cytosol	12.45	17.53
CDY50263	Canola	cytosol	5.74	17.34
CDY40119	Canola	nucleus	12.33	17.29
CDY08792	Canola	vacuole	15.75	17.22
CDX83925	Canola	nucleus	17.7	17.12
CDX96790	Canola	nucleus	17.22	16.89
CDY14564	Canola	golgi	15.63	16.8
CDY28224	Canola	endoplasmic reticulum, vacuole	11.84	16.44
CDY36465	Canola	cytosol	11.72	16.35
CDX68701	Canola	endoplasmic reticulum, extracellular	11.6	15.91
CDY65125	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.73	15.62
CDY48465	Canola	endoplasmic reticulum, plasma membrane, vacuole	16.61	15.53
CDX87682	Canola	cytosol	0.61	15.15
CDY11021	Canola	golgi	17.34	14.07
CDX92643	Canola	golgi	17.34	14.02
CDY03441	Canola	golgi	16.85	13.62
CDY34291	Canola	golgi	16.48	13.24

Protein Annotations

MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	GO:A0A078FIA6	UniProt:A0A078FIA6	EnsemblPlants:CDY11838	ProteinID:CDY11838
ProteinID:CDY11838.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538
GO:GO:0036459	EnsemblPlantsGene:GSBRNA2T00060662001	InterPro:IPR028889	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973
PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
UniParc:UPI0004EECA28	InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:

Description

BnaC03g12640DBnaC03g12640D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FIA6]

Coordinates

chrLK032015:+:25772..29434

Molecular Weight (calculated)

90769.6 Da

IEP (calculated)

10.247

GRAVY (calculated)

-0.600

Length

819 amino acids

Sequence
(BLAST)

001: MEALSNGSSA VSSSSASAVF RKIEFHPARK PFNGFSNGKS DFKIETLNPS SSSANKQAFF SSQSFKKRDG SDLLENGLDR ELTFNRTIRK IGAGLENLGN
101: TCFLNSVLQC LTYTEPLAAY LHDVGHEKRC HVAGFCALCA MQKHVRNALQ ATGKILAPKY LVSNLRCVSR NFRNCRQEDA HEYMINLLEC MHKCSLPSGV
201: SSESSDAYRS SLVHKIFGGS LRSRVKCAQC SHCSDKFDPF LDLSLDISKA DSLQRALTRF TAVELLDNGA KVYQCERCKQ KVKATKELTV SKAPYVLTVH
301: LKRFEAHRSE KIDKKVDFAS AVDMKPFVSG PCEGNLKYTL YGVLVHYGRS IHSGHYACFV RTSSGMWYSL DDNRVLQVSE KNVFNQKAYM LFYVRDRQNT
401: APKNVVPMVK KESLPTARAS MIISSNGNDQ VSGSTVMKAS ILNGLGANGR APLRSCDQGA PAVFNRKDLN AKETQKDPPS SVEAKEILKR ENGLSATAVL
501: SQKDSNAREN LQKELPISQA NGERSLVKEK IKAPCVTLPG KAAPLLDGSR NAQILVNLPT SVANKDEETL TTPRKTRKGK TKTLQVGLKL FKLALGVRKK
601: MKQKRGRSSA VKVIPEELRS KKGATDQERS TSEITSEVAS GSSCLPGKDN IVSVHNERRR NSNGNMLLGS ATGDLKERTN ENGAVLASDQ KPPLRSSDLS
701: KASQIAKRKR ESSKDEQIVL QKDEPTILTR GLPETVVAKW DEEVSASKKM GMNEGTRIGY VADEWDEEYD RGKKKKIRIK EEMYKGPNPF QMIASKKQQT
801: DTKKKWTQRM NTAKTGFRI

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.