CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 3
plasma membrane 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH72298	Soybean	cytosol, plastid	53.38	94.88
GSMUA_Achr3P04660_001	Banana	nucleus	33.44	50.33
VIT_19s0014g00210.t01	Wine grape	nucleus	47.29	47.76
VIT_00s0174g00260.t01	Wine grape	nucleus	52.27	47.34
Solyc07g005530.2.1	Tomato	nucleus	45.4	44.42
PGSC0003DMT400028924	Potato	nucleus	45.18	44.06
CDY11838	Canola	nucleus, plastid	38.32	42.25
CDX88651	Canola	nucleus, plastid	38.32	41.99
Bra006790.1-P	Field mustard	nucleus, plastid	38.32	41.64
AT5G57990.1	Thale cress	nucleus	39.53	41.56
CDY32735	Canola	nucleus	36.43	41.07
CDY02782	Canola	nucleus	36.32	40.95
CDY57464	Canola	nucleus	37.65	40.09
Bra020400.1-P	Field mustard	nucleus	36.66	39.74
CDY55010	Canola	nucleus	37.1	39.41
GSMUA_Achr4P01920_001	Banana	nucleus	40.86	38.2
Os06t0184300-01	Rice	mitochondrion	37.54	36.69
EER89337	Sorghum	nucleus	37.21	36.64
Zm00001d045104_P005	Maize	nucleus	36.54	36.54
TraesCS7A01G147900.1	Wheat	nucleus	36.77	36.05
TraesCS7B01G051400.2	Wheat	nucleus	37.32	35.89
HORVU7Hr1G030300.1	Barley	nucleus	36.88	35.81
TraesCS7D01G149800.1	Wheat	nucleus	37.1	35.75
Bra002683.1-P	Field mustard	nucleus	37.98	34.93
GSMUA_Achr6P01970_001	Banana	nucleus, plastid	30.9	32.86
TraesCS6D01G339500.1	Wheat	nucleus	36.32	31.75
TraesCS6A01G357500.1	Wheat	mitochondrion, nucleus	36.54	30.81
TraesCS6B01G389500.1	Wheat	nucleus	35.88	30.31
KRH43175	Soybean	nucleus	11.52	28.18
KRH59329	Soybean	nucleus	11.52	28.18
Os02t0795000-01	Rice	nucleus	36.43	27.76
KRG97572	Soybean	nucleus	11.3	27.64
KRH31299	Soybean	nucleus	11.18	27.37
KRH43852	Soybean	nucleus	18.16	25.59
KRH13611	Soybean	nucleus	18.38	25.46
KRH74417	Soybean	nucleus	18.16	22.68
KRH39541	Soybean	nucleus	18.38	22.46
KRH15706	Soybean	golgi, plasma membrane, vacuole	17.05	21.12
KRH05330	Soybean	golgi, plasma membrane	16.83	20.62
KRH05289	Soybean	nucleus	12.4	20.18
KRH61621	Soybean	golgi	16.39	19.95
KRH52289	Soybean	golgi	16.17	19.89
KRH15753	Soybean	nucleus	12.07	19.68
KRH23933	Soybean	cytosol	11.18	18.67
KRH03615	Soybean	cytosol	12.18	18.58
KRH20191	Soybean	plastid	12.18	18.52
KRH39864	Soybean	cytosol	10.85	18.42
KRH69660	Soybean	golgi	17.28	16.63
KRH74502	Soybean	golgi, plasma membrane, vacuole	16.5	16.07
KRH72452	Soybean	golgi, plasma membrane	17.94	15.64
KRH16837	Soybean	golgi	18.05	15.6
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	16.28	14.85
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	16.17	14.76
KRH52893	Soybean	extracellular, golgi, vacuole	14.51	14.75
KRH62182	Soybean	golgi, vacuole	18.16	14.41

Protein Annotations

EntrezGene:100798267	MapMan:19.2.3.1.1.9	Gene3D:3.90.70.10	EMBL:ACUP02010335	MEROPS:C19.A12	EnsemblPlantsGene:GLYMA_17G074200
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
UniProt:I1MT28	InterPro:IPR028889	EnsemblPlants:KRH03060	ProteinID:KRH03060	ProteinID:KRH03060.1	PFAM:PF00443
ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44033	PANTHER:PTHR44033:SF1	InterPro:Papain_like_cys_pep_sf
InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI000233E3CA	InterPro:USP_CS	InterPro:USP_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr17:-:5806194..5812253

Molecular Weight (calculated)

100424.0 Da

IEP (calculated)

9.463

GRAVY (calculated)

-0.572

Length

903 amino acids

Sequence
(BLAST)

001: MAETIVIQTE PPNPPDPSSS TTTTAAPPLL SRKIVFLPVK KPFKGFSNHF HVETLNPSSS SEPRPSGSVA KKHDASEFSE YGLDPEFSFG ITFRRIGAGL
101: RNLGNTCFLN SVLQCLTYTE PLAAYLQSGK HKTSCHVAGF CALCAIQNHV SRALQSTGRI LAPEDLVGNL RCISRNFRNA RQEDAHEYMV NLLECMHKCC
201: LPSGIPSESP GAYEKSFVHK IFGGRLRSQV KCHQCSYCSN KFDPFLDLSL EIFKADSLQK ALSNFTAAEW LDGGEKEYHC QRCKQKVKAL KQLTIHKAPY
301: VLTIHLKRFH AHDTGQKIKK KVQFGCALDL KPFVSGSNDG DVKYSLYGVL VHAGSSTHSG HYYCYVRTSN NMWYTLDDNR VSHVSEREVL NQQAYMLFYV
401: RDRKSIVPRK PVDIAKKENM KTNLNVNRES STSNHVLKEY PNGTVENKAE KGALVLQKHS VILAENLIQS KRHGSELSSE AQAQKDSPDG LSVAKSELGC
501: LSSLDHSGKD YSLPHNLKSL AAPVGKNNLR NENVFSKEGI KDSPSIVPSS TNPQNVELTT EWKSQSLKKN LVKIVDVATP QDSSTNMTNG ICPKTSLIHL
601: KVNHQLGTSA IGSVCEKASS VVHEDLVGSQ GLVLNKSVNT SLNTESLNQK PLKKSKKKFL KYQVSWMHLR PIFYYMAYLG PRKKNHKRIK RRTLSMKNPN
701: KDKLDKLAFS SEDAKPDVFP CLSSCSDSKA TKAGYRPSAN FKSSDESLIE TRAEGEFRKR IDHSCAVLAS AAQIENISGS GSVVSQFEAR QADSAQDSTR
801: DQMHNGLMSM PNGGPEETVV ARWDDIELPS SQHLESKNDK TVSIGYVGDE WDEEYDKGKR KKIRGFKHSF GGPNLFQEIA VEKSKFKRAK FDQSCSGNPP
901: FRI

Best Arabidopsis Sequence Match ( AT5G57990.1 )
(BLAST)

001: MEVATSSTEI TIQTDRDPSS NNNGSCAVAS STASAVFRKI EFHPARKPFN GFSNGRSDFK IETLNPCSSN QRLLSAPSAK KPDSSDLLEH GFEPDLTFSI
101: TFRKIGAGLQ NLGNTCFLNS VLQCLTYTEP LAATLQTAAH QKYCHVAGFC ALCAIQKHVR TARQANGRIL APKDLVSNLR CISRNFRNCR QEDAHEYMIN
201: LLECMHKCSL PSGVPSESSD AYRRSLVHKI FGGSLRSQVK CEQCSHCSNK FDPFLDLSLD ISKADSLQRA LSRFTAVELL DNGAKVYQCE RCKQKVKAKK
301: QLTVSKAPYV LTVHLKRFEA HRSEKIDRKV DFTSAIDMKP FVSGPHEGNL KYTLYGVLVH YGRSSHSGHY ACFVRTSSGM WYSLDDNRVV QVSEKTVFNQ
401: KAYMLFYVRD RQNAVPKNSV PVVKKESFAT NRASLIVASN IKDQVNGSTV IKECGFGALV ANGLAPLKSC GPSTPAVLTQ KDLNAKETQN NAISNVEAKE
501: ILETENGSAP VKTCDLAAPT VLVQKDLNTK EIFQKEVPLP QANGEGSLVK EDSKAACLIL PEKVSPHLDG SANAQTLVKL PTLGPKAENS VEEKNSLNNL
601: NEPANSLKVI NVSVGNPPVE KAVLIDQTMG HHLEESATSI ESLKLTSERE TLTTPKKTRK PKTKTLKVEF KFFKLALGLR KKKVQRRERL STTVAGEIIS
701: EELLSKKRVK YQDTSLIAPS KMISSSDGAV TSDQQQPVGS SDLSEASQNA KRKRESVLLQ KEAVNILTRG VPETVVAKWD EEISASQKRG SKSEGASSIG
801: YVADEWDEEY DRGKKKKIRI KEESYRGPNP FQMLASKRQK ETKKKWTQSI TDAKTAYRI

Arabidopsis Description

UBP23Ubiquitin carboxyl-terminal hydrolase 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.