CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH39864	Soybean	cytosol	91.87	93.42
GSMUA_Achr1P11380_001	Banana	cytosol	50.28	72.92
CDX72275	Canola	cytosol	48.43	70.81
Bra024037.1-P	Field mustard	cytosol	47.87	64.75
GSMUA_Achr8P09770_001	Banana	cytosol	49.54	62.62
VIT_13s0019g01690.t01	Wine grape	cytosol	63.22	61.84
CDY23262	Canola	nucleus	58.78	58.14
Solyc01g068240.2.1	Tomato	cytosol	56.38	57.22
Bra010268.1-P	Field mustard	cytosol	59.89	56.94
AT4G30890.2	Thale cress	cytosol	56.75	55.72
CDY36465	Canola	cytosol	59.15	54.51
OQU81355	Sorghum	cytosol, nucleus, plastid	7.76	53.85
CDY28224	Canola	endoplasmic reticulum, vacuole	58.6	53.73
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	58.6	53.73
CDX68701	Canola	endoplasmic reticulum, extracellular	58.41	52.93
PGSC0003DMT400033175	Potato	mitochondrion	15.9	51.5
PGSC0003DMT400033184	Potato	cytosol	17.19	50.82
Zm00001d022414_P001	Maize	cytosol	51.76	50.72
Os07t0661300-01	Rice	cytosol, plasma membrane	45.1	49.9
PGSC0003DMT400033182	Potato	cytosol	12.75	48.94
PGSC0003DMT400033173	Potato	mitochondrion	24.4	37.18
TraesCS2A01G127200.3	Wheat	cytosol	50.65	36.63
HORVU2Hr1G022340.2	Barley	cytosol	50.28	35.84
TraesCS2D01G129600.2	Wheat	cytosol	50.46	35.41
TraesCS2B01G149000.2	Wheat	cytosol	50.46	35.41
KRH31299	Soybean	nucleus	17.56	25.75
KRH43175	Soybean	nucleus	17.56	25.75
KRH59329	Soybean	nucleus	17.56	25.75
KRG97572	Soybean	nucleus	17.19	25.2
Zm00001d007096_P007	Maize	mitochondrion	50.28	22.99
KRH72298	Soybean	cytosol, plastid	18.3	19.49
KRH05289	Soybean	nucleus	16.45	16.04
KRH15753	Soybean	nucleus	16.08	15.7
KRH03615	Soybean	cytosol	16.45	15.03
KRH20191	Soybean	plastid	16.45	14.98
KRH43852	Soybean	nucleus	16.82	14.2
KRH13611	Soybean	nucleus	16.64	13.8
KRH52289	Soybean	golgi	17.93	13.22
KRH61621	Soybean	golgi	17.93	13.07
KRH15706	Soybean	golgi, plasma membrane, vacuole	17.56	13.03
KRH05330	Soybean	golgi, plasma membrane	17.56	12.89
KRH69660	Soybean	golgi	20.7	11.94
KRH74417	Soybean	nucleus	15.9	11.89
KRH39541	Soybean	nucleus	16.08	11.77
KRH74502	Soybean	golgi, plasma membrane, vacuole	20.15	11.76
KRH03060	Soybean	nucleus	18.67	11.18
KRH52893	Soybean	extracellular, golgi, vacuole	17.93	10.92
KRH13569	Soybean	endoplasmic reticulum, plasma membrane	19.41	10.62
KRH21804	Soybean	endoplasmic reticulum, plasma membrane	19.22	10.51
KRH16837	Soybean	golgi	19.96	10.33
KRH72452	Soybean	golgi, plasma membrane	19.59	10.23
KRH62182	Soybean	golgi, vacuole	19.41	9.23

Protein Annotations

EntrezGene:100816791	MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	UniProt:A0A0R0H004	EMBL:ACUP02007163	EnsemblPlantsGene:GLYMA_12G011800
GO:GO:0003674	GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152
GO:GO:0009056	GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459
InterPro:IPR028889	EnsemblPlants:KRH23933	ProteinID:KRH23933	ProteinID:KRH23933.1	PFAM:PF00443	ScanProsite:PS00972
ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001
UniParc:UPI0006EDB78D	InterPro:USP_CS	InterPro:USP_dom	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr12:+:857542..865232

Molecular Weight (calculated)

59823.0 Da

IEP (calculated)

7.709

GRAVY (calculated)

-0.393

Length

541 amino acids

Sequence
(BLAST)

001: MRRDISDSPF KMFVFGSFTE DETRSLLSKQ SFGKKEKPVE KNQLQFGSLN SVTVESNNLL NSSKASYNAP PSDSRKCNGV KSAIDNSPEV SGTVKENGSI
101: TNISPRSTST ISVNEVEEKN VNFFTLRCED GPLNKFTKLS LDASEAESLK NVHTTGSGDD SAPKLPDREP QKAPNGHAVM HVKDILPRGL INSGNLCFLN
201: ATMQALLSCS PFVHLLQQLR TCNLPKVGYP TLTAFAEFIT QFDMPSITKL KKQDADTFES GRPFRPVMFE GVLKNFTPDV PNSISGRPRQ EDAQEFLSFV
301: MDQMHDELLK LEGQSSSLNG SKSSLVSSVE DDEWETVGPK NKSAVTRTQS FLPSELSGIF GGQLRSLVRA KGNRASATVQ PYLLLHLDIY PDAVHTIEDA
401: LHLFSAPETL EGYRTSLTAK AGVVTARKSV QIVTLPKIMI LHLMRFGYGS QGSTKLHKPV HFPLELVLGR DLLVSPSTEG RKYELVATIT HHGMEPSKGH
501: YTADAQYPNG RWLRFDDQSV FAIGTNKVLH DQAYVLFYRQ I

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.