Factsheet for Bra024037.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX72275	Canola	cytosol	85.25	92.16
GSMUA_Achr1P11380_001	Banana	cytosol	63.0	67.56
Bra010268.1-P	Field mustard	cytosol	84.25	59.23
AT4G30890.2	Thale cress	cytosol	77.75	56.44
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	82.5	55.93
GSMUA_Achr8P09770_001	Banana	cytosol	58.25	54.44
OQU81355	Sorghum	cytosol, nucleus, plastid	9.75	50.0
KRH39864	Soybean	cytosol	64.0	48.12
PGSC0003DMT400033175	Potato	mitochondrion	20.0	47.9
KRH23933	Soybean	cytosol	64.75	47.87
PGSC0003DMT400033182	Potato	cytosol	16.75	47.52
VIT_13s0019g01690.t01	Wine grape	cytosol	65.5	47.38
PGSC0003DMT400033184	Potato	cytosol	20.75	45.36
Os07t0661300-01	Rice	cytosol, plasma membrane	54.75	44.79
Solyc01g068240.2.1	Tomato	cytosol	58.75	44.09
Zm00001d022414_P001	Maize	cytosol	58.75	42.57
PGSC0003DMT400033173	Potato	mitochondrion	29.75	33.52
TraesCS2A01G127200.3	Wheat	cytosol	56.25	30.08
HORVU2Hr1G022340.2	Barley	cytosol	56.75	29.91
TraesCS2D01G129600.2	Wheat	cytosol	56.25	29.18
TraesCS2B01G149000.2	Wheat	cytosol	56.0	29.05
Bra038533.1-P	Field mustard	nucleus	22.25	25.07
Bra010647.1-P	Field mustard	nucleus	22.75	24.46
Bra011823.1-P	Field mustard	nucleus	23.0	20.86
Zm00001d007096_P007	Maize	mitochondrion	56.5	19.1
Bra028566.1-P	Field mustard	cytosol	20.0	15.87
Bra007837.1-P	Field mustard	nucleus	19.75	15.49
Bra011290.1-P	Field mustard	vacuole	23.5	15.36
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	24.0	15.21
Bra022060.1-P	Field mustard	nucleus	22.5	13.53
Bra021031.1-P	Field mustard	nucleus	21.0	13.08
Bra025000.1-P	Field mustard	endoplasmic reticulum	23.0	12.62
Bra027341.1-P	Field mustard	mitochondrion	21.25	12.37
Bra024386.1-P	Field mustard	golgi	22.25	11.6
Bra020400.1-P	Field mustard	nucleus	22.75	10.92
Bra006790.1-P	Field mustard	nucleus, plastid	22.5	10.83
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	24.0	10.76
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	23.5	10.72
Bra002683.1-P	Field mustard	nucleus	23.25	9.47
Bra013814.1-P	Field mustard	golgi	24.0	9.41
Bra019219.1-P	Field mustard	golgi	23.75	9.39

Protein Annotations

MapMan:19.2.3.1.1.10	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra024037	EnsemblPlants:Bra024037.1	EnsemblPlants:Bra024037.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4E5I3	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR44747
InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI0002540E98	InterPro:USP_CS	InterPro:USP_dom

Description

AT4G30890 (E=5e-172) UBP24 | UBP24 (UBIQUITIN-SPECIFIC PROTEASE 24); ubiquitin thiolesterase/ ubiquitin-specific protease

Coordinates

chrA03:-:28038157..28041030

Molecular Weight (calculated)

44213.8 Da

IEP (calculated)

8.455

GRAVY (calculated)

-0.244

Length

400 amino acids

Sequence
(BLAST)

001: MVATETPLPI KKELTPRGLI NAGNLCFLNA TLQALLSCSP FVQLLQRVQF QDIPKAESPT LSAFSEFISE LDAPSSSSFR NNVAVVESSR PFTPAMFEGV
101: LRNFTPDVLN NMSGRPRQED AQEFLSFIMD QMHDELLKIR EVSPKLTASK SSVVTFVDDD DEWETVGPKN KSAVTRTQSF VPSELSDIFG GQLRSVVKAK
201: GSKDSATVQP YLLLHLDIHQ GAVRTIEDAL HLFSAPEDLE GYRASVTGKA GAVSARKSIK IQKLSKIMIL HLMRFSYGNQ GSTKLHKPVH FPLELNLGRY
301: VLVSPSNGGY ELVATITHHG RDPSKGHYTT DARRKNNQWL RFDDASVTTI GTKQVLHDQA YVLFYKQVSD KCGLGVEVEV IGWRAMGSSG NSRSLAFPQL

Best Arabidopsis Sequence Match ( AT4G30890.3 )
(BLAST)

001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V

Arabidopsis Description

UBP24Ubiquitin carboxyl-terminal hydrolase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPS3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.