Factsheet for Bra010647.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
golgi 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	golgi
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY68864	Canola	nucleus	100.0	100.0
AT4G39910.1	Thale cress	nucleus	96.77	97.03
VIT_07s0141g00230.t01	Wine grape	nucleus	89.52	90.24
KRH59329	Soybean	nucleus	89.52	90.24
KRH43175	Soybean	nucleus	89.25	89.97
Bra038533.1-P	Field mustard	nucleus	85.48	89.58
KRH31299	Soybean	nucleus	88.44	89.16
GSMUA_Achr10P...	Banana	cytosol	82.53	88.99
KRG97572	Soybean	nucleus	88.17	88.89
PGSC0003DMT400032703	Potato	nucleus	85.48	86.89
GSMUA_Achr7P19160_001	Banana	mitochondrion	68.82	83.93
GSMUA_Achr8P14390_001	Banana	cytosol	82.53	83.88
HORVU4Hr1G078590.1	Barley	cytosol	81.72	83.06
Os03t0190800-01	Rice	cytosol	81.45	82.79
TraesCS4A01G406600.1	Wheat	cytosol	81.45	82.79
Zm00001d028005_P001	Maize	nucleus	81.45	82.79
TraesCS4B01G306100.1	Wheat	cytosol	81.45	82.79
TraesCS4D01G304300.1	Wheat	cytosol	81.18	82.51
TraesCS7D01G125700.1	Wheat	nucleus	80.91	82.24
EER92723	Sorghum	nucleus	80.38	81.69
Bra011823.1-P	Field mustard	nucleus	96.77	81.63
GSMUA_Achr10P...	Banana	nucleus	81.45	81.02
VIT_09s0070g00500.t01	Wine grape	golgi, mitochondrion, nucleus, peroxisome	76.08	79.05
CDY68683	Canola	endoplasmic reticulum, vacuole	100.0	76.39
Bra024037.1-P	Field mustard	cytosol	24.46	22.75
Bra028566.1-P	Field mustard	cytosol	23.39	17.26
Bra010268.1-P	Field mustard	cytosol	25.54	16.7
Bra011230.1-P	Field mustard	endoplasmic reticulum, vacuole	25.27	15.93
Bra011290.1-P	Field mustard	vacuole	26.08	15.85
Bra021031.1-P	Field mustard	nucleus	26.34	15.26
Bra007837.1-P	Field mustard	nucleus	20.7	15.1
Bra022060.1-P	Field mustard	nucleus	26.08	14.59
Bra032080.1-P	Field mustard	endoplasmic reticulum, vacuole	24.46	14.42
Bra027341.1-P	Field mustard	mitochondrion	26.08	14.12
Bra025000.1-P	Field mustard	endoplasmic reticulum	26.88	13.72
Bra024386.1-P	Field mustard	golgi	27.42	13.3
Bra006790.1-P	Field mustard	nucleus, plastid	25.27	11.31
Bra026003.1-P	Field mustard	endoplasmic reticulum, plasma membrane, vacuole	26.61	11.29
Bra016618.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	26.61	11.1
Bra020400.1-P	Field mustard	nucleus	24.46	10.92
Bra002683.1-P	Field mustard	nucleus	25.54	9.67
Bra019219.1-P	Field mustard	golgi	25.27	9.29
Bra013814.1-P	Field mustard	golgi	25.27	9.22

Protein Annotations

MapMan:19.2.3.1.1.2	Gene3D:3.90.70.10	EnsemblPlantsGene:Bra010647	EnsemblPlants:Bra010647.1	EnsemblPlants:Bra010647.1-P	GO:GO:0003674
GO:GO:0003824	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016579	GO:GO:0016787	GO:GO:0019538	GO:GO:0036459	InterPro:IPR028889
UniProt:M4D2E7	PFAM:PF00443	ScanProsite:PS00972	ScanProsite:PS00973	PFscan:PS50235	PANTHER:PTHR43942
PANTHER:PTHR43942:SF5	InterPro:Papain_like_cys_pep_sf	InterPro:Peptidase_C19_UCH	SUPFAM:SSF54001	UniParc:UPI00025465AF	InterPro:USP_CS
InterPro:USP_dom	SEG:seg	:	:	:	:

Description

AT4G39910 (E=1e-207) ATUBP3, UBP3 | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease

Coordinates

chrA08:+:15766731..15768906

Molecular Weight (calculated)

42558.4 Da

IEP (calculated)

6.569

GRAVY (calculated)

-0.431

Length

372 amino acids

Sequence
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADSEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATTKPER ETSSSSSPEK IANGPKAPLA NGVHKEPVVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYMEQLGR YKKLSYRVVF PLELKLSNTV EPYTDVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT TK

Best Arabidopsis Sequence Match ( AT4G39910.1 )
(BLAST)

001: MGAAGSKLEK ALGDQFPEGE RYFGFENFGN TCYCNSVLQA LYFCVPFREQ LLEYYTSNKS VADAEENLMT CLADLFSQIS SQKKKTGVIA PKRFVQRLKK
101: QNELFRSYMH QDAHEFLNYL LNEVVDILEK EAKATKTEHE TSSSSSPEKI ANGLKVPQAN GVVHKEPIVT WVHNIFQGIL TNETRCLRCE TVTARDETFL
201: DLSLDIEQNS SITSCLKNFS STETLHAEDK FFCDKCCSLQ EAQKRMKIKK PPHILVIHLK RFKYIEQLGR YKKLSYRVVF PLELKLSNTV EPYADVEYSL
301: FAVVVHVGSG PNHGHYVSLV KSHNHWLFFD DENVEMIEES AVQTFFGSSQ EYSSNTDHGY ILFYESLGPT K

Arabidopsis Description

UBP3Ubiquitin carboxyl-terminal hydrolase 3 [Source:UniProtKB/Swiss-Prot;Acc:O24454]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.